Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1741 ATGGCTTCCGAACCCGATGTGTCTGAGATTTCGTCAATGTTGGAAAGGATGATGAGAAACAGAGACCTGCCTCTGTTTCTACCCTTCATCTTTGGCATGTCAAACGCAGCTTCTAGAAGAGACGGTGATGACTCGGGTCAGGAAAACGAGAGTGAAGAAAGTAACCATCGCGAAAGAATAATCTTGATTAACCCCTTTACACAAGGAATGGTGGTGATCGATGGTACTTCAAGCCTTGAGACTCTGTTTCGTGAATTGGGTAGTAGCAAAAGTGGGCTGCCTCCAGCTTCCAAAGAATCTATAGATGCTCTGCCTAGCGTTGAAGTTGGAGAAGGTGAAGAAGGAGAGTGTGTGATTTGTTTGGAGGAGTGGGAGGCTGGGGGGGTGGTGAAAGAGATGCCTTGCAAGCATAAATTTCATCCAAATTGTATAGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGCATGAGATGCCTGTGAATGAAGACGTGGGCAAGAAGAGAGATGAAGAAGATGCGGGAGAGAGGAGGAGAAGGGCTAGGGGAGAAGTTTGGGTTAGTTTCTCTTTCAATAGTGGCAGTAGGAGAAGTGATGATACAAACCAAGTCCCTTCAGGTGATTCCATTGATTCTTCATCAAGTCCCAGAGCTGATGCCGAGGAGGTAGATAGTTAA 684 0.4664 MASEPDVSEISSMLERMMRNRDLPLFLPFIFGMSNAASRRDGDDSGQENESEESNHRERIILINPFTQGMVVIDGTSSLETLFRELGSSKSGLPPASKESIDALPSVEVGEGEEGECVICLEEWEAGGVVKEMPCKHKFHPNCIEKWLGIHGSCPVCRHEMPVNEDVGKKRDEEDAGERRRRARGEVWVSFSFNSGSRRSDDTNQVPSGDSIDSSSSPRADAEEVDS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1741 227 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Dere09g1741 227 MobiDBLite consensus disorder prediction 37 58 - -
Dere09g1741 227 MobiDBLite consensus disorder prediction 193 227 - -
Dere09g1741 227 MobiDBLite consensus disorder prediction 193 216 - -
Dere09g1741 227 FunFam E3 ubiquitin-protein ligase RNF181 85 164 - -
Dere09g1741 227 Pfam Ring finger domain 116 158 IPR001841 -
Dere09g1741 227 SUPERFAMILY RING/U-box 108 164 - -
Dere09g1741 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 164 IPR013083 -
Dere09g1741 227 SMART ring_2 117 157 IPR001841 -
Dere09g1741 227 MobiDBLite consensus disorder prediction 41 58 - -
Dere09g1741 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1741 Dere-ChrDere09 22343314 22343997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1741 1 205 C3H Transcription Factor Family AT1G26800 53.333 1.05e-68 208