Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1729 ATGAGTGATCATTTGGTGCTGTATGTCGATCGTTTGGTACGCCCTGTGCCCGTTGAGTCGGTGACGCAGCCGGCTCAATTGCAGTCTGACTCATCTATGGCGGGTAAGACCGTGGACGTGGCGGGCCCCTCTGGCTCTGCACAACCGGCGGAGGACGATGACGCTAGGTCGGAGCATGGCGAGGGTGGTAGTGAGGATGAGCCACTGATCCCGAACGCGGAGTGTCGCATTTGTCAGGAGGAAGACAGCATTAAGAATTTAGAAATACCTTGCGCCTGCAGCGGCAGTCTGAAGTTTGCTCATCGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGGGATACAACTTGCGAGATATGCCATAAGCCTTATCAACCTGACTATGTTGCCCCGCCTCCTCGCCCTCATCCTGAAGAAACTACCATTGATATAGGTGGAGGTTGGACAATCTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCTTGGCGATTGCAGAGGCTGAACGTCAATTCTTGGAGGCTGAATACGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCCTTTTGCCGTTCAGCTGCTTTGATTTTAATGGCCCTTCTACTCTTGCGGCATGCACTTTCTGTCACAGATGCTGACTCTGATGATGATCCATCAACCTTTTTCTCTATCTTCTTACTTCGTGCAGCTGGATTTCTCTTACCTTGCTATATCATGGCTTGGGCTATCAGCATCTTGCAACGTCGGAGGCAAAGACAGGAGGCTGCAGCACTGGCGGCAACCCAAGTTGCTTTTGTTCTGCAATCTGGGCAGCGTAGGGGCCTGCAATTCGCTTTAGCACCAGGACCAACGGTGAATACACAGCAGGAACATGTTGTTTAG 885 0.5164 MSDHLVLYVDRLVRPVPVESVTQPAQLQSDSSMAGKTVDVAGPSGSAQPAEDDDARSEHGEGGSEDEPLIPNAECRICQEEDSIKNLEIPCACSGSLKFAHRKCVQHWCNEKGDTTCEICHKPYQPDYVAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDADSDDDPSTFFSIFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFALAPGPTVNTQQEHVV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1729 294 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 254 IPR033275 -
Dere09g1729 294 ProSiteProfiles Zinc finger RING-CH-type profile. 67 127 IPR011016 GO:0008270
Dere09g1729 294 FunFam RING/FYVE/PHD zinc finger protein 63 131 - -
Dere09g1729 294 SUPERFAMILY RING/U-box 72 125 - -
Dere09g1729 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 130 IPR013083 -
Dere09g1729 294 MobiDBLite consensus disorder prediction 51 65 - -
Dere09g1729 294 MobiDBLite consensus disorder prediction 22 69 - -
Dere09g1729 294 Pfam Protein of unknown function (DUF3675) 126 244 IPR022143 -
Dere09g1729 294 Coils Coil 163 183 - -
Dere09g1729 294 CDD RING_CH-C4HC3_MARCH 75 121 - -
Dere09g1729 294 SMART ringv_2 74 121 IPR011016 GO:0008270
Dere09g1729 294 Pfam RING-variant domain 75 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1729 Dere-ChrDere09 22240625 22243810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1729 71 121 C3H Transcription Factor Family AT2G37950 42.593 2.03e-08 52.0