Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1727 ATGGACTTGACCCCCATCTCCACAACCACAAACGCTGTACATACAGATTCTCTGACCCGACCCACCACCAACGGCTTCCTCAAGCGCCACCCGCCCGCAGCTGCCGCTCCTCCTCCCCCGCCGCCGTCGCCCATGGTGGTTTCCTCCGGCTACAAGGAATGCCTCAAGAACCACGCCGCCAGCATCGGCGGCCACGCGCTTGACGGCTGCGGTGAGTTCATGCCCTCACCCTCCTCCAACCCCACCGACCCCCGCTCGCTAAAATGCGCCGCCTGCGGTTGCCACCGGAACTTCCACCGCCGTGACGCGCAACAAGAATATCCCACCTCCACCCCCAACTTCCTCAGCTGCTTCTACTCGCCGCCTCCGGCGGCCATACCTCCACCGGCGGCGCTGGCTCCCCGGGGGTTAAGCACGAGCACGAGCCCAAGCCCAAGCCCCAGCCTCAGCCCGATGTCGAGCCCTTCGCCGCCTCCGCTCTCGCATTTCCCACCTTCCTCGTACCACTCGTCGGGAGGAGTAGTGCCCCATATGCTCTTGGCGCTCGGGAACGGCTATTCAGGGCCGTCGGATGAGCAGAACCGGAGCTTCAATTCTGCGGCGGTGATGGTGACGAAGGTGGATAAGATAACCCCAAGTGGGAAGAAGAGGTGTAGAACCAAGTTTAGTCAAGAACAGAAGGAGAGGATGTTAGCGTTTTCTGAGAAATTGGGGTGGAAAATGCACAAGGGAGATGATGGCTTGGTTAAGGAATTCTGCGACGAGGTTGGTGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCATAATAACAAGAACACCTTCAGGATTAAGAGATCAGAAATTGAGAATACCACAGGGACCGAGAAAGTGAGTGGGGACGATGATAATAACAATAATAGCAATGGTGGTGGGTTTCACAGTGATATTAACAAAAATCCTTTAGTCAATACTGACATTCACATCAGTAATAACGAAGGTGGATGTGTTGATCTTCATTCTTCTGTTAATGGGTCTTCTTCTTCTTAA 1026 0.5517 MDLTPISTTTNAVHTDSLTRPTTNGFLKRHPPAAAAPPPPPPSPMVVSSGYKECLKNHAASIGGHALDGCGEFMPSPSSNPTDPRSLKCAACGCHRNFHRRDAQQEYPTSTPNFLSCFYSPPPAAIPPPAALAPRGLSTSTSPSPSPSLSPMSSPSPPPLSHFPPSSYHSSGGVVPHMLLALGNGYSGPSDEQNRSFNSAAVMVTKVDKITPSGKKRCRTKFSQEQKERMLAFSEKLGWKMHKGDDGLVKEFCDEVGVSRGVFKVWMHNNKNTFRIKRSEIENTTGTEKVSGDDDNNNNSNGGGFHSDINKNPLVNTDIHISNNEGGCVDLHSSVNGSSSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1727 341 MobiDBLite consensus disorder prediction 290 311 - -
Dere09g1727 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 273 - -
Dere09g1727 341 MobiDBLite consensus disorder prediction 1 47 - -
Dere09g1727 341 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Dere09g1727 341 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 102 IPR006456 -
Dere09g1727 341 MobiDBLite consensus disorder prediction 285 311 - -
Dere09g1727 341 FunFam Zinc-finger homeodomain protein 2 203 276 - -
Dere09g1727 341 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Dere09g1727 341 MobiDBLite consensus disorder prediction 128 168 - -
Dere09g1727 341 MobiDBLite consensus disorder prediction 1 24 - -
Dere09g1727 341 MobiDBLite consensus disorder prediction 148 164 - -
Dere09g1727 341 Gene3D - 205 275 - -
Dere09g1727 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 102 IPR006456 -
Dere09g1727 341 NCBIfam homeobox domain, ZF-HD class 215 272 IPR006455 -
Dere09g1727 341 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1727 Dere-ChrDere09 22211471 22212496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1727 51 283 ZF-HD Transcription Factor Family AT1G69600 46.581 2.92e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere09g1727 ZF-HD_dimer 2.3e-28 No_clan