Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1708 ATGGAAGCAGATCATCTTCGTAGACCCAATTTTCCATTGCAGCTTTTGGAGAAAAAAGATGAACAACAACAGCAACAATCTTGCTCCACTTCACCCTACACCGTCGCCATCGGCAACGGCGACCCAGCCCGACCTGCTTCTGACATCCGCTCACCGGACCCACCCAAGAAGCCACCTCCCAAGCGGAGCTCCACCAAGGACAGGCACACCAAGGTGGACGGCCGTGGCCGCCGGATCCGCATGCCCGCCGTCTGTGCTGCGAGGGTGTTTCAGCTGACCAGAGAGCTCGGCCACAAGTCCGACGGTGAAACAATCGAGTGGCTACTCCAGCAGGCGGAGCCCGCCGTGATCGCCGCCACCGGTACTGGTACAATTCCTGCCAATTTTACTTCCCTTAACATCTCGCTCCGCAGCTCCGGTTCCACCATGTCGGCGCCGTCGCACTACTTCCGGGGCAATTACTTCAGCCCCAACTTCTCGGCCGCGGCTGTGGCGGCGGCCCAGTTGAGGAACCGGAGCGAGTGGGAGAGAAACATGGTTGTGGATGATTCTAGAAGGATCTTGTTTCCCGGCGCCGCCGTTGGATTATCCTCCTCGGAAAATAATTCTCCTGTGTCTACGGTGTTGAACTTCAATAATTCTGCCAATGCCAATATGCCACAAACAAAGCCAGAGCTCCGTGAAGAAGCAGGCAGTGGCACTGGCAGCCTCGAATTGACAACGGCGGCCACGACGACGACGGAGGATTCGGACCAGGGTGGTTTAGGAAGAAAGAGAAGGCCTGAGCAAGAACTGTCACAAAGCCAGATGGGAAGTTATCTATTGCAAACAAGCACAGGCTCAATTCCGGCGAGTCACGCTTCCATTCCGGCGACCTTTTGGGCTATGGGCAACGGCGGCGGAGGCAACGGCGGGGATCCCATCTGGCCTATTCCCTCAGTTGGTAATAGTAACATGTACAGGGGAGCCATGCCAGGTGGTGGGATTCACTTCATGAACTTCGCTTCTCCATTAGTGCCTCTAATGGCTTCGGGCAACGGCACAATGGTGACTGAAAGCAACTTAGGCATCCTTGCAGCACTTAACGCATACAGGCCAATTCCGGCCAACGGCATGTCGGAGCCAGCTGCGTCGGCGGCAGCGGGTAACCGGCAACATCCACAGCACGAAGGAGATCACGAGGGGACATGA 1191 0.5659 MEADHLRRPNFPLQLLEKKDEQQQQQSCSTSPYTVAIGNGDPARPASDIRSPDPPKKPPPKRSSTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFSPNFSAAAVAAAQLRNRSEWERNMVVDDSRRILFPGAAVGLSSSENNSPVSTVLNFNNSANANMPQTKPELREEAGSGTGSLELTTAATTTTEDSDQGGLGRKRRPEQELSQSQMGSYLLQTSTGSIPASHASIPATFWAMGNGGGGNGGDPIWPIPSVGNSNMYRGAMPGGGIHFMNFASPLVPLMASGNGTMVTESNLGILAALNAYRPIPANGMSEPAASAAAGNRQHPQHEGDHEGT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1708 396 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Dere09g1708 396 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 338 IPR005333 GO:0003700
Dere09g1708 396 MobiDBLite consensus disorder prediction 1 15 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 17 36 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 197 269 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 197 221 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 372 396 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 50 78 - -
Dere09g1708 396 Pfam TCP family transcription factor 64 269 IPR017887 -
Dere09g1708 396 MobiDBLite consensus disorder prediction 1 78 - -
Dere09g1708 396 MobiDBLite consensus disorder prediction 234 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1708 Dere-ChrDere09 21992783 21993973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1708 56 357 TCP Transcription Factor Family AT3G47620 44.315 1.98e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dere09g1708 TCP 4.2e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1708 09 21992783 21993973 Dere09g1708 09 21992783 21993973 ECH