Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1699 ATGTCTTCCAGAAGATCCTCCCGCTCTGGACAATCCCGTGGTTCATCTGATATCACTGAGGCTCAGATTAGCGACCTCGTCTCCAAGCTACAACAACTCATCCCCGAGCTTCGCGCTCCACGTCGTTCCGACAAGGTTTCAGCTTCGAAGGTGTTACAGGAGACATGTAACTACATCAGGAGCTTGCAAAGAGAAGTTGGTGATCTGAGTGAGAGACTGTCAGAGCTCTTGGCCAACGTTGACTCCGACCAAGCCGCCATTATCAGGAGCTTACTTATGTAA 282 0.5035 MSSRRSSRSGQSRGSSDITEAQISDLVSKLQQLIPELRAPRRSDKVSASKVLQETCNYIRSLQREVGDLSERLSELLANVDSDQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1699 93 Gene3D - 20 89 IPR036638 GO:0046983
Dere09g1699 93 FunFam Transcription factor ILI6 5 89 - -
Dere09g1699 93 Pfam Helix-loop-helix DNA-binding domain 22 63 IPR011598 GO:0046983
Dere09g1699 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Dere09g1699 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 80 IPR036638 GO:0046983
Dere09g1699 93 Coils Coil 59 79 - -
Dere09g1699 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1699 Dere-ChrDere09 21885771 21886586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1699 18 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 76.000 4.36e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1699 HLH 3e-06 No_clan