LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1694	ATGGCTTTCTTCCCTGCAAATTTCATGCTTCAAACCCCTCACCCAGAAGACCATCATCATCAACCTCCTCCTTCTCTCAACTCACTCCTACCTTCACGTGCTCCTCAAGATTATCATCATGGGGGAGCTTCTTTTCTAGGTAAAAGATGCATGTCATTTTCAGGAATTGAACTGGGCGAAGAAGCAAATGCCGAGGAAGACTTGTCTGATGATGGGTCTCAGGCAGGGGAGAAGAAAAGAAGGCTTAACATGGAACAGGTTAAGACACTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAACCAGAGAGGAAAATGCAACTTGCAAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGAAGAGCTAGGTGGAAGACTAAGCAGCTTGAGAAAGACTATGATCTTCTTAAAAGACAATATGATGCTCTTAAGGCAGATAACGAAGCTCTTCAAGCTCAGAACCAGAAACTCCAGTCAGAGATACTGGCACTGAAGAGCAGAGAGCCAACTGAATCCATCAACCTCAACAAAGAAACAGAGGGATCTTGCAGCAACAGAAGTGAGAACAGCTCAGAGATTAAGTTTGATATAACAAGGACACCTGCTATTGATAGTCCTGATCCATCGACACAACAAACCAGCATAACCCTCTTTCCATCTTCTTCCGCTTCTGTTAGGCCATCTTCAGGAGGAGTGGCTCATCAGCTTCTGCAAGCTTCTTCAAGGCCAGAGCTTCAGTGCCAGAAGGCTGATCAGATGGCCAAAGATGAGAGTCTGAGCAATATGTTTTGTGGAATCGATGATCAATCTGGATTCTGGCCATGGCTGGAGCAGCAACATTTCAATTGA	867	0.4521	MAFFPANFMLQTPHPEDHHHQPPPSLNSLLPSRAPQDYHHGGASFLGKRCMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDALKADNEALQAQNQKLQSEILALKSREPTESINLNKETEGSCSNRSENSSEIKFDITRTPAIDSPDPSTQQTSITLFPSSSASVRPSSGGVAHQLLQASSRPELQCQKADQMAKDESLSNMFCGIDDQSGFWPWLEQQHFN	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1694	288	MobiDBLite	consensus disorder prediction	178	197	-	-
	Dere09g1694	288	FunFam	Homeobox-leucine zipper protein ATHB-13	70	137	-	-
	Dere09g1694	288	MobiDBLite	consensus disorder prediction	61	82	-	-
	Dere09g1694	288	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	65	217	IPR045224	GO:0003700
	Dere09g1694	288	Pfam	Homeobox associated leucine zipper	133	173	IPR003106	GO:0006355\|GO:0043565
	Dere09g1694	288	Gene3D	-	70	139	-	-
	Dere09g1694	288	ProSiteProfiles	'Homeobox' domain profile.	73	133	IPR001356	GO:0003677
	Dere09g1694	288	MobiDBLite	consensus disorder prediction	11	38	-	-
	Dere09g1694	288	MobiDBLite	consensus disorder prediction	181	197	-	-
	Dere09g1694	288	Coils	Coil	125	173	-	-
	Dere09g1694	288	PRINTS	Lambda-repressor HTH signature	104	113	IPR000047	GO:0003677
	Dere09g1694	288	PRINTS	Lambda-repressor HTH signature	113	129	IPR000047	GO:0003677
	Dere09g1694	288	CDD	homeodomain	78	134	IPR001356	GO:0003677
	Dere09g1694	288	Pfam	Homeodomain	78	131	IPR001356	GO:0003677
	Dere09g1694	288	ProSitePatterns	'Homeobox' domain signature.	108	131	IPR017970	GO:0000981\|GO:0006355
	Dere09g1694	288	SMART	HOX_1	76	137	IPR001356	GO:0003677
	Dere09g1694	288	SUPERFAMILY	Homeodomain-like	71	135	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1694	Dere-ChrDere09	21845191	21846501	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1694	1	288	Homeobox Transcription Factor Family	AT1G69780	62.876	5.17e-115	331

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Dere09g1694		Homeodomain	1.4e-15	CL0123