Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1692 ATGCAAGATATGAAGAAGCAGCAGCATCAGCAAGGCAATGAAGAATCCAAGAAGAAGGAGCGTCACATTGTCTCCTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTAGCATCCATGGAACAGAAAATTGGACTATTATTGCGTCTAAATTCAAGGATAAAACGACAAGACAGTGCAGGAGAAGGTGGTACACGTACTTAAATTCTGATTTCAAGAAAGGGGGGTGGTCACCGGAGGAGGACATGCTATTATGTGAGGCTCAAAAGATATTTGGCAACAGATGGACAGAAATAGCAAAGGTCGTTTCAGGCAGAACGGATAACGCTGTGAAAAACCGCTTCTCCACGTTGTGCAAAAAGAAAGCGAAATATGAAGCCTTGGCAAAAGAGAACAGCACTTCGTACGTCAATTCAAATAACAAAAGGATTATTTTCCAACATGTTTACAGTACAGATGCAACATCAGAGGCTGCAGCACCAATTAAAAAGATAAGAAGGGCCCATATCCCTGAAGGTGTGGAAAAGATCAACTTTGGAGAGAGGTTACATAAACAATCTGGAACACCAGTTAGTCAGCAACCAAGAGCACCATTTGCTGTATTAGCTAATTTCAATAATAACAGCTTGCATGACCAGCATCCTGTCTGCAATGTCAAGTTCAGCAGTCATGCCCAGAATAACAAGACTCAAGGAACATTTATAAAAAAGGATGATCCAAAGATAAGTTTGTTGATGCAGCAAGCAGAATTACTAAGTTCACTAGCAGTAAAAGTTAATACAGAGAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTGCAAGAATTTCTGAACCAAACAAAGGAATCAGATCTTTTGAAGCATAAGATCCCAGATTTACAGCTTGTAGATCTTAAAAATATGGTGGAGGACTTAAAGAGTGGTAATAAAGGAACCCAGCCGTGTTGGAGGCAACCAGAGCTATATGAAGACTCTCCAGGCAGTTCTGACTACAGCACAGGATCAACTATCCTGCCCCATTCAGCTGGTGATAATTTGGAACATTCACTGCATCAGAGTATTGGAACTGAAAGGAAGTCTACTGAAACTGACGAGAAAAAAGGAGTTATTAGTTGTGAGAAAAATGTTCTTTCTGCTTCAACTGTGGATCAAGCAGATATGTTGCCATCATGCAAGGAACAGATAAATAATGACGCCTTTGTTTCTGCCTTGTCAAGTACAGAGTTCAGTTCCCCTCTTCAGGTTACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCAGAGTTTTCAGAAAGTGAAAGGAACTTTCTGATGAAAACACTTGGGATGGAATCCCCATCCCTGAACCCAAGTGCAAAAGCCTCACAACCACCACCCTGCAAAAGAGCCCTACTACATAGTTTATAA 1422 0.4163 MQDMKKQQHQQGNEESKKKERHIVSWTQEEDDILREQISIHGTENWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKKAKYEALAKENSTSYVNSNNKRIIFQHVYSTDATSEAAAPIKKIRRAHIPEGVEKINFGERLHKQSGTPVSQQPRAPFAVLANFNNNSLHDQHPVCNVKFSSHAQNNKTQGTFIKKDDPKISLLMQQAELLSSLAVKVNTENMDQSLENAWKVLQEFLNQTKESDLLKHKIPDLQLVDLKNMVEDLKSGNKGTQPCWRQPELYEDSPGSSDYSTGSTILPHSAGDNLEHSLHQSIGTERKSTETDEKKGVISCEKNVLSASTVDQADMLPSCKEQINNDAFVSALSSTEFSSPLQVTPLFRSLAAGIPSPEFSESERNFLMKTLGMESPSLNPSAKASQPPPCKRALLHSL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1692 473 CDD SANT 78 119 IPR001005 -
Dere09g1692 473 SMART sant 74 122 IPR001005 -
Dere09g1692 473 SMART sant 22 71 IPR001005 -
Dere09g1692 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Dere09g1692 473 Gene3D - 76 146 - -
Dere09g1692 473 Gene3D - 13 74 - -
Dere09g1692 473 CDD SANT 25 69 IPR001005 -
Dere09g1692 473 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
Dere09g1692 473 MobiDBLite consensus disorder prediction 328 349 - -
Dere09g1692 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 73 IPR017930 -
Dere09g1692 473 PANTHER MYB PROTEIN-RELATED 25 157 - -
Dere09g1692 473 MobiDBLite consensus disorder prediction 1 21 - -
Dere09g1692 473 ProSiteProfiles Myb-like domain profile. 25 69 IPR001005 -
Dere09g1692 473 Pfam Myb-like DNA-binding domain 26 86 - -
Dere09g1692 473 MobiDBLite consensus disorder prediction 310 349 - -
Dere09g1692 473 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Dere09g1692 473 FunFam Transcription factor MYB124 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1692 Dere-ChrDere09 21810645 21815965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1692 64 473 MYB Transcription Factor Family AT1G14350 53.253 1.36e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g1692 Myb_DNA-bind_6 1.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1692 09 21810645 21815965 Dere09g1692 09 21810645 21815965 ECH