Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1689 ATGGGTAACTGCTTAGATCGTTCTGCGAAAATTGATGAACTGCAAAACACCCGAACCACTTCTGGTATACCCTCTTTCACCATTTTCTCTCACTTTCTTTTTGAGACCTCGAGGATGCATGTTCAGTATTTGTGTGTACTTGTCTTGATGCCGGACCAGCATGATTCTGTCGATTTTCTAGTGTGTTTGTACATTTCAGCTTTGAATTACAACCTCTGTATACAACACCAAGGAATACCACAAACTAGTCCATCAAATTCCATAGTACGCGTGGCATCGTACAAAGAGAAGCGGAATGGCTTGAAAGTTGTTCTTCCGACGAGGTCGGAGGGTGAGATATTGTCGTCTCCGAATCTGAAAGTATTCACCTTCAACGACCTCAAGAACGTCACCAAGAATTTTCGCGACGAAAACCTCCTCGGAGAAGGCGGATTTGGGTTTGTTTATAAGGGATGGATCGATCTCCACACCTGCGCTGCTTCAAAACCTGGCTCTGGAGTCGTTGTTGCTGTAAAGAAGCTTAAGCCCGAAGTATTCCGAGGTCATAAGCAGTGGCTGACAGAAGTGAACTACCTTGGGCAACTCCACCATCTCAATCTGGTTAAACTAATTGGGTACTGCATGGAGGGGGAGAACAACCGGCTATTGGTTTACGAGTTTATGGCCAAGGGCAGCTTAGAGAATCATCTCTTCAGAACTCAGCCACTGCCGTGGTCGGTGAGGATGAAAGTGGCGATTGGTGCTGCGAGAGGGCTCGCTTTTCTTCACAACGCAGAGGCACAAGTCATATACCGCGATTTCAAAGCTTCCAATATTTTACTTGATGCTGACTACAATGCTAGACTCTCAGATTTTGGGTTAGCTAAGGAGGGCCCTTCTGGGGATGAAACTCATGTGTCCACTCAAGTGGTGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCCACAGGTCGACTTACGGCAAAAAGTGACGTGTACAGTTTTGGAGTAGTGTTACTAGAACTGATGTCTGGAAGACGAGCAGTAGACAAAAGTCGAGGAGTCGTGGAACAGAACCTGGTGGAGTGGACAAAGCCATATCTGAGCGACAAGCGAAGGTTGTTTCGAATAATGGACACCAAGTTGGGAGGGCAATACCCACAGCAAGCAGCCTACATGGCAGCTGACCTGGCACTTCAATGCCTCAACAGTGAAGCCAAGGCTAGGCCTCCTATGACTCAGGTTTTAGCTACCTTGGAACAGATTGAAGCCCTCCCCCTTAGAAACCATGATCAAAATAATACTAATATTAGTGATTAA 1302 0.4639 MGNCLDRSAKIDELQNTRTTSGIPSFTIFSHFLFETSRMHVQYLCVLVLMPDQHDSVDFLVCLYISALNYNLCIQHQGIPQTSPSNSIVRVASYKEKRNGLKVVLPTRSEGEILSSPNLKVFTFNDLKNVTKNFRDENLLGEGGFGFVYKGWIDLHTCAASKPGSGVVVAVKKLKPEVFRGHKQWLTEVNYLGQLHHLNLVKLIGYCMEGENNRLLVYEFMAKGSLENHLFRTQPLPWSVRMKVAIGAARGLAFLHNAEAQVIYRDFKASNILLDADYNARLSDFGLAKEGPSGDETHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELMSGRRAVDKSRGVVEQNLVEWTKPYLSDKRRLFRIMDTKLGGQYPQQAAYMAADLALQCLNSEAKARPPMTQVLATLEQIEALPLRNHDQNNTNISD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1689 433 CDD STKc_IRAK 140 416 - -
Dere09g1689 433 Gene3D Phosphorylase Kinase; domain 1 106 220 - -
Dere09g1689 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Dere09g1689 433 Pfam Protein tyrosine and serine/threonine kinase 138 412 IPR001245 GO:0004672|GO:0006468
Dere09g1689 433 Gene3D Transferase(Phosphotransferase) domain 1 221 432 - -
Dere09g1689 433 SUPERFAMILY Protein kinase-like (PK-like) 113 416 IPR011009 -
Dere09g1689 433 ProSitePatterns Protein kinases ATP-binding region signature. 140 173 IPR017441 GO:0005524
Dere09g1689 433 PANTHER OS01G0588500 PROTEIN-RELATED 91 417 - -
Dere09g1689 433 FunFam Serine/threonine-protein kinase BIK1 104 220 - -
Dere09g1689 433 ProSiteProfiles Protein kinase domain profile. 134 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1689 433 FunFam Serine/threonine-protein kinase PBS1 221 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1689 Dere-ChrDere09 21699094 21702206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1689 112 413 Glycoside Hydrolase AT3G07070 50.163 2.86e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere09g1689 PK_Tyr_Ser-Thr 2.1e-45 CL0016