Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1680 ATGGAGCTTGCAACTGGAAAAACTGAATTCAGCCCATTAAGTCATAAGTTGCTCATTTTGGAAGATGGGAATATTGCCATTAAGAGTGTTAAAAGGCGGCGAAGAGAATCATCCATGGCGGTTTTAGAGAGCAATGAGCAACAAGAGCAGCAGCCACAAGGTGACCAGTCAACCACAACCACCACTGTGAAAAGAAGCTCAAGGTTTCGCGGAGTAAGCAGACATAGATGGACAGGGAGATATGAAGCTCACTTATGGGACAAAGGGACTTGGAATCCAACTCAGAAGAAGAAAGGGAAGCAAGGGGCTTATACTGATGAAGAAGCTGCTGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAACTTCTACCTTCACAAACTTCCCTGTATCTGATTATGAGCAAGAGATTGAGAAAATGAAAACCATGACAAGAGAAGAATACCTTGCTTCTTTGAGAAGGAGAAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATAGGGAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACCTACAGTACACAGGAAGAGGCTGCTCGTGCATATGATATGGCAGCTATAGAATACAGAGGCATGAATGCAGTAACGAACTTTGACTTGAGCACCTATATTAGATGGCTGAGACCAGAAGCCCTTTCTACTGCTTCTGAACAACGAAAGCCAAGCCCACACTTTCACCATCCAATGGCAAACCCTAACCTCACCCAAACCAGAGGACTCATTGAGGTATCCAATTTCAATCACAATGCAATGAAGGAAGACATTCCTCAGTCTATGAACCCTTTAAGTAATAGTAGCACCAGGTCATCATCTTCTCCAACAGCATTAGGGCTTCTCCTGAAATCCTCAGTTTTCAGAGAGCTAATGCAGAAAAATCTGAATCATGGTAATGAGAAACGTGAATTAGACTCGTTGGAAAACCCACTGGAGGGCAATGATGAGTTTTCCTACTTGTGCTCTTCCAATGGCAATAGATTACCATATTTGCAGTCACCATTAGAGAAAGCATTACCACCGTTGCGTGGAACTGGGCAATCTCTATGGAATGGGTGCTTTGAACGTGTCTAA 1146 0.4398 MELATGKTEFSPLSHKLLILEDGNIAIKSVKRRRRESSMAVLESNEQQEQQPQGDQSTTTTTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYTDEEAAARAYDLAALKYWGTSTFTNFPVSDYEQEIEKMKTMTREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDMAAIEYRGMNAVTNFDLSTYIRWLRPEALSTASEQRKPSPHFHHPMANPNLTQTRGLIEVSNFNHNAMKEDIPQSMNPLSNSSTRSSSSPTALGLLLKSSVFRELMQKNLNHGNEKRELDSLENPLEGNDEFSYLCSSNGNRLPYLQSPLEKALPPLRGTGQSLWNGCFERV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1680 381 MobiDBLite consensus disorder prediction 41 67 - -
Dere09g1680 381 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 290 - -
Dere09g1680 381 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Dere09g1680 381 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Dere09g1680 381 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Dere09g1680 381 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 Pfam AP2 domain 166 218 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Dere09g1680 381 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Dere09g1680 381 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Dere09g1680 381 MobiDBLite consensus disorder prediction 38 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1680 Dere-ChrDere09 21559798 21563401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1680 64 249 AP2-EREBP Transcription Factor Family AT5G57390 64.211 6.30e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere09g1680 AP2 1.8e-07 CL0081