Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g1671 | ATGGAATCAGAATTGTGTCTGATAGACCAATCACTCAATGATAGTTACTCCGACGATGCCCGCGAGTTGCTCGACGACTTGCCTGATAGTTTTACCATAACCGACCCTTCCATCCCTGGTCACCCAATTGTATTCGCCAGCCGAGGGTTCTTGAAAACGTTTGGATATTCCAAGGATGAAGTAATTGGCAAGCATGGTGGTCTATTCCAAGGACCAGGGACTTGTAGAAGATCGGTGATGGAAATTCGAGAGGCTATACGGGAAGAGAGAACTATTCAGATCAATTTGTTGAATTATCGTAAGGATGGGAGACCCTTCTGGATATTGTTTCACATGAGCCCTGTGTTTAGCGATGTGAATGGAGGGGTGATTCACTTTGTGGCTGTTCAAGTGCCTATATCGGAAAAACGGACGTCCTCGGGGTGTGGATTTAGGAGAGATGGAGTTAATGTGTGTGAGGATGGGTCTAGAGTGCAGGATTTTGTATACGGATCTTGTCGGAGGGAAGTATGCTCGGAGTCTTCGGTGGTGCTTGGTCGTGTTTTGTCCCCGGATCAATTGTTAGAACATGAAGTTAGAGAATTAGAGAGTGAAGAGCCGTGTGAGGCAAGTGATATTGAGAAGAGAAGAGCTATGACTACCATGGATAATATCTTCTCTGTACTAATCCACTGTAGCGAGTTAACTGGCAAATTGGTGTGTAGAAAGAGACGCAGCATGCCTGACGTGGGTCTCCTTGGCTCATCCTTGATAATTTCTCTTGGTAGAATCAAACAGAGCTTTGTATTAACTAATCCGCACTTACCTGACATGCCTATTGTGTACGCCAGTGATGCATTCTTGAAATTGACAGGTTATGCAAGAGATGAAGTGTTGGGGCGCAATTGTAGATTTCTAAGTGGAGTAAATACTGAAGCCTCGACTTTATGCCTGATAAGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTTCAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATATCACCTATTCGTGATGCTTCTGGCAAGATAGCATACTTTGTGGGTGTTCAAATAGAAGAGGATGGGTGTAAGAAGCAGGAGAAACAGGACTTGAGCCCTGAGGCCAGGCAGCTTAGTGTGGTTGGTGCAGTCAGGGTTGCTGTAAGGAGTTCATCAATGATTGCTGGATCTTCAAGGTCATAG | 1209 | 0.4442 | MESELCLIDQSLNDSYSDDARELLDDLPDSFTITDPSIPGHPIVFASRGFLKTFGYSKDEVIGKHGGLFQGPGTCRRSVMEIREAIREERTIQINLLNYRKDGRPFWILFHMSPVFSDVNGGVIHFVAVQVPISEKRTSSGCGFRRDGVNVCEDGSRVQDFVYGSCRREVCSESSVVLGRVLSPDQLLEHEVRELESEEPCEASDIEKRRAMTTMDNIFSVLIHCSELTGKLVCRKRRSMPDVGLLGSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLSGVNTEASTLCLIRESIKTEQPCTVRILNFRKDKSSFWNLLHISPIRDASGKIAYFVGVQIEEDGCKKQEKQDLSPEARQLSVVGAVRVAVRSSSMIAGSSRS | 402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g1671 | 402 | Gene3D | PAS domain | 17 | 140 | - | - | |
| Dere09g1671 | 402 | NCBIfam | PAS domain S-box protein | 273 | 359 | IPR000014 | - | |
| Dere09g1671 | 402 | NCBIfam | PAS domain S-box protein | 22 | 137 | IPR000014 | - | |
| Dere09g1671 | 402 | ProSiteProfiles | PAS repeat profile. | 16 | 64 | IPR000014 | - | |
| Dere09g1671 | 402 | Gene3D | PAS domain | 260 | 399 | - | - | |
| Dere09g1671 | 402 | ProSiteProfiles | PAS repeat profile. | 273 | 295 | IPR000014 | - | |
| Dere09g1671 | 402 | FunFam | protein TWIN LOV 1 | 260 | 397 | - | - | |
| Dere09g1671 | 402 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 263 | 359 | IPR035965 | - | |
| Dere09g1671 | 402 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 130 | IPR035965 | - | |
| Dere09g1671 | 402 | CDD | PAS | 269 | 358 | IPR000014 | - | |
| Dere09g1671 | 402 | ProSiteProfiles | PAC domain profile. | 320 | 374 | IPR000700 | - | |
| Dere09g1671 | 402 | Pfam | PAS domain | 260 | 359 | IPR000014 | - | |
| Dere09g1671 | 402 | Pfam | PAS domain | 29 | 135 | IPR000014 | - | |
| Dere09g1671 | 402 | PANTHER | PROTEIN TWIN LOV 1 | 3 | 392 | - | - | |
| Dere09g1671 | 402 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Dere09g1671 | 402 | SMART | pac_2 | 323 | 365 | IPR001610 | - | |
| Dere09g1671 | 402 | SMART | pas_2 | 18 | 87 | IPR000014 | - | |
| Dere09g1671 | 402 | SMART | pas_2 | 248 | 321 | IPR000014 | - | |
| Dere09g1671 | 402 | CDD | PAS | 27 | 133 | IPR000014 | - | |
| Dere09g1671 | 402 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 224 | - | - | |
| Dere09g1671 | 402 | ProSiteProfiles | PAC domain profile. | 90 | 145 | IPR000700 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g1671 | Dere-ChrDere09 | 21456369 | 21459365 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere09g1671 | 247 | 369 | AGC Kinase Gene Family | AT3G45780 | 47.967 | 2.52e-35 | 136 |