Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1667 ATGGCGGCGGGTGGGAAACTTTTTGGGGCTTCCAACATGACACTATTGCTCCAAAACGAAAGGCTTCCTCCCTCTTCTGAAGTTCTCGACTCTCTCTGGGTTCACACCTCTAGTTCCACTTTCCCAGGTTCAAAACCCATGGTGAATTTTGAGAGTGTTAGTGGGTGCACAGTGACAGATAGGCCGTTTCTGCAAGGTCTGGAAAAAGAGGAGACTGGAGAGGAAGAGTACGAGGCGTGCTTTCATCAAGCGGGGAAGAAGAGGAGGCTGACGAGCGAGCAAGTTCAGTTTCTTGAGAAGAATTTCGAGGTAGAGAACAAGCTCGAACCAGAGAGGAAGGTGCAGCTGGCGAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAACAGCTTGAGAAAGACTATGGCACCTTGAAAGCTAGCTATGATAAGCTCAAGACTGACCATGACAATCTTGCCAAGGAGAACGACAAGTTAAGGGAAGAGGTGAATTCCCTAAAGAACAGACTGATTACTAGAGAAAAAGAGAAAGAAGAATCTCACAAGTCCCTCAACATCGATCCTGAAGATGCCGAAGCAGAGAATTCTGCAGAACGAGAGCAGGAAGACGGGTCCAAGGATGTGTCAGCGCCAATGGGAAGAATGTGGAAGCAGGAAGAGGCGAATTCGGCGAAAAGCGACGTGGTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTCGGTGCTGGATCCGGCGGATTCGTCGCAGGGAATCGAACCAGAGCAGTCCGATTTCTCGCACGAGGAAGAAGATAATCTGAGTCGCAAGCTCCTGGGCCTGCCTTGCTTCCCCAAGGTGGAAGAAGAAGGATGCTACGACGACCCTCCCGAAGGTTCCTGTAACAATTTTGGGTTCCCTCTTGAAGAAGATCACACCTTCTGTTTTTGGCCTTACTGA 975 0.5036 MAAGGKLFGASNMTLLLQNERLPPSSEVLDSLWVHTSSSTFPGSKPMVNFESVSGCTVTDRPFLQGLEKEETGEEEYEACFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDKLKTDHDNLAKENDKLREEVNSLKNRLITREKEKEESHKSLNIDPEDAEAENSAEREQEDGSKDVSAPMGRMWKQEEANSAKSDVVDSEDTEANHHSSVLDPADSSQGIEPEQSDFSHEEEDNLSRKLLGLPCFPKVEEEGCYDDPPEGSCNNFGFPLEEDHTFCFWPY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1667 324 Gene3D - 89 135 - -
Dere09g1667 324 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Dere09g1667 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 228 IPR045224 GO:0003700
Dere09g1667 324 MobiDBLite consensus disorder prediction 182 201 - -
Dere09g1667 324 SUPERFAMILY Homeodomain-like 78 143 IPR009057 -
Dere09g1667 324 MobiDBLite consensus disorder prediction 232 252 - -
Dere09g1667 324 SMART HOX_1 84 145 IPR001356 GO:0003677
Dere09g1667 324 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Dere09g1667 324 MobiDBLite consensus disorder prediction 253 267 - -
Dere09g1667 324 Coils Coil 154 188 - -
Dere09g1667 324 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
Dere09g1667 324 Gene3D - 136 187 - -
Dere09g1667 324 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Dere09g1667 324 CDD homeodomain 86 142 IPR001356 GO:0003677
Dere09g1667 324 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Dere09g1667 324 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Dere09g1667 324 MobiDBLite consensus disorder prediction 182 279 - -
Dere09g1667 324 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1667 Dere-ChrDere09 21409757 21411782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1667 63 198 Homeobox Transcription Factor Family AT4G40060 53.333 2.72e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere09g1667 Homeodomain 2.1e-16 CL0123