Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1656 ATGGAGAAAGTGATTGATGGAGACTACTACAAAATACTCCAAGTAACAAGTAAAGCTAACGACGAAGAACTGAAGAAGGCTTACAGAAACTTGGCCATGAAATGGCACCCAGATAAGAATTATCATAATCCAACTAAGAAAGACGAAGCAGAAGCCAAATTCAAACAGATTTCAGAGGCTTACGACGTTCTCAGTAACCCTAGGAAGCGAAAGATCTACGATGATGCCCAGAATCCTCGTAATTATAATGGAAAGAGAAATCAGAAAAATCGTGGTGGAAATATTGAAGACAGTGACCCTAAGAAGCGCAAGATCTCTGATTTAGGAGGCCAATATCCTCTTAATTACGAAAGGGTTATCCTGAAGAATCCTCACGAGGAGATTGAAATTCATGAGGTGAAAGACGTAAAAGCAGCCGCCATTGAGAAAAAATTGGCGTTAACCCTAGAAAATCTGTACCAGGGTTGCCAAAGAAGAGTGAAAGTCTCAAGGAGTGTTCCTGATGCTTCTGGTAACCTGATCATTGTTGAAGAAATATTGAAGATAGATATAGAGCCTGGTTGGAAGAAGGACACAAGAATCACTTTTCCTGGGAAAGGCAACCAAAAACCAGGATCTACCACTCCTGCTGATCTAGTTTTTGTGGTGGATGAGAAACCTCATCCCATTTTCAAGAGGGAGGGAAACGATTTGGTTGTCATGCATAAGATATTACTTATGGAGGCTCTCACTGGAAAGAATATCAAATTCAAAACCTTGGATGGAAGAGATCTCACAACTCCGGTTATTGATATAGTGAAACCAGGCAGTGAGGTGGTGATCCCAGATGAAGGGATGCCAATGCCAAGGGAACCAGGCAAAAAAGGAAACCTCAGAATTAAGTTTGAAATTGTGTTTCCATCACAGCTTACAACACCACAGAAGTGTGATCTGAGAAGGATTCTCAGTGAATTTGATAGCTAA 963 0.4091 MEKVIDGDYYKILQVTSKANDEELKKAYRNLAMKWHPDKNYHNPTKKDEAEAKFKQISEAYDVLSNPRKRKIYDDAQNPRNYNGKRNQKNRGGNIEDSDPKKRKISDLGGQYPLNYERVILKNPHEEIEIHEVKDVKAAAIEKKLALTLENLYQGCQRRVKVSRSVPDASGNLIIVEEILKIDIEPGWKKDTRITFPGKGNQKPGSTTPADLVFVVDEKPHPIFKREGNDLVVMHKILLMEALTGKNIKFKTLDGRDLTTPVIDIVKPGSEVVIPDEGMPMPREPGKKGNLRIKFEIVFPSQLTTPQKCDLRRILSEFDS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1656 320 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Dere09g1656 320 Gene3D DnaJ domain 2 96 IPR036869 -
Dere09g1656 320 MobiDBLite consensus disorder prediction 90 106 - -
Dere09g1656 320 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Dere09g1656 320 FunFam Dnaj homolog subfamily b member 137 219 - -
Dere09g1656 320 SUPERFAMILY HSP40/DnaJ peptide-binding domain 137 231 IPR008971 GO:0006457|GO:0051082
Dere09g1656 320 CDD DnaJ 8 66 IPR001623 -
Dere09g1656 320 PRINTS DnaJ domain signature 49 69 IPR001623 -
Dere09g1656 320 PRINTS DnaJ domain signature 28 43 IPR001623 -
Dere09g1656 320 PRINTS DnaJ domain signature 10 28 IPR001623 -
Dere09g1656 320 FunFam DnaJ subfamily B member 13 221 301 - -
Dere09g1656 320 Pfam DnaJ C terminal domain 141 300 IPR002939 -
Dere09g1656 320 Gene3D - 221 301 - -
Dere09g1656 320 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 8 315 - -
Dere09g1656 320 SMART dnaj_3 7 69 IPR001623 -
Dere09g1656 320 MobiDBLite consensus disorder prediction 68 109 - -
Dere09g1656 320 CDD DnaJ_C 141 303 - -
Dere09g1656 320 SUPERFAMILY HSP40/DnaJ peptide-binding domain 224 308 IPR008971 GO:0006457|GO:0051082
Dere09g1656 320 Gene3D - 139 219 - -
Dere09g1656 320 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Dere09g1656 320 Pfam DnaJ domain 8 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1656 Dere-ChrDere09 21227676 21229320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1656 9 74 C2H2 Transcription Factor Family AT1G74250 35.821 7.20e-08 52.0