Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1645 ATGGATCCAGGGGCTATGATGAACGACGGTTCCTTCGCGAATGGCGGAGCTAATACGGCACCGTATAACCTGGCTGATATCTGGCAGTTCCCGATGAATGGTGGTGCGAGTCTGGGGGATTCCGGAGGCGGGTTGGGACTGAGGAGGCCGCAGTTCGGGCATAATTTGGGGCAGTTCGGTGAATTTCCGGGTCCGAATCGGGATATCCCGGGTAATGATCAAATTAGCTCCGAGCAGAGAGGGAATCATGGAGTCAACAATAGGAAGCGTCGCGATTCCGAGGACGAGTCCACCAAGGGCGTCTCCACCAGCAATGGCGGCAATGGCATGAATGATGGTGGTGAAAAAAAGCGGCTTAAAGCGTCTTCAGGGAATAGGAGTGAGAGCCGTGACACTAAAGCTGAAGCAGAACCCAGTTCAGGAAAGCCTGCAGAGCAATGTAACCAGCCGCCTCCTGAGCCTCCTAAGCAAGATTACATTCATGTACGAGCCAGAAGGGGTCAGGCTACTGACAGTCACAGTCTAGCTGAAAGAGCTAGAAGGGAAAAGATAAGTGAGAGGATGAAAATACTTCAGGATTTGGTCCCTGGTTGTAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATTCAATCACTGCAGCGCCAAGTGGAGTTCTTGTCCATGAAACTTGAAACTGTAAATTCAAGACTGAACCCTGGCATCGAAGTGTTTCCTCCTAAAGATTTTGGTCAACAATCATTTGACACAGCCGGCATGGCATTTGGCTTACAAGCTATAAGAGAGTATAGCCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAAAACATCATAG 870 0.4885 MDPGAMMNDGSFANGGANTAPYNLADIWQFPMNGGASLGDSGGGLGLRRPQFGHNLGQFGEFPGPNRDIPGNDQISSEQRGNHGVNNRKRRDSEDESTKGVSTSNGGNGMNDGGEKKRLKASSGNRSESRDTKAEAEPSSGKPAEQCNQPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRLNPGIEVFPPKDFGQQSFDTAGMAFGLQAIREYSRGSSPEWLHMQVGGGFEKTS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1645 289 FunFam Basic helix-loop-helix transcription factor 165 237 - -
Dere09g1645 289 MobiDBLite consensus disorder prediction 83 98 - -
Dere09g1645 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Dere09g1645 289 CDD bHLH_AtBPE_like 158 243 - -
Dere09g1645 289 Gene3D - 165 239 IPR036638 GO:0046983
Dere09g1645 289 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Dere09g1645 289 SMART finulus 174 224 IPR011598 GO:0046983
Dere09g1645 289 MobiDBLite consensus disorder prediction 36 158 - -
Dere09g1645 289 MobiDBLite consensus disorder prediction 113 138 - -
Dere09g1645 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 236 IPR036638 GO:0046983
Dere09g1645 289 Coils Coil 215 235 - -
Dere09g1645 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 256 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1645 Dere-ChrDere09 21060750 21063001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1645 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.566 2.38e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1645 HLH 2.4e-08 No_clan