Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1643 ATGTCGCCGGAAGGCGACGTCGTTTCGTCTACTCCGGGAGGCTTCAGGCTCCGATGGGATGTGTTCTTGAGCTTCAGAGGTGCGGACACCCGCACCTCCTTCATTAATGATCTCTACACTGCGCTTTATTCTTGCGGTGTTCGAGTCTTCCTCGACAACGTCGGGTTGGATCGCGGTACGGAGATCGCACCGAGTCTTTTTGAAGCCATCGATGACTCGGCCGCTTCCATTGTCGTCTTCTCACCCAACTATACAGAATCTCATTGGTGTCTCGAGGAGCTCGAAAAGATTTGCGATTGCCGGAGGCTGATTCTGCCGGTGTTCTACCGCGTCGCCCCGTGGGACGTCCGGAATCAGGAGGGTCCCTTCAAAAAATATTTCAAGAACCACGAAAACAGATTTGGGAAAGAGACAGTGATCAAGTGGAGAAAAGCTATGAACAAAGTCGGCGGAATTTCTGGTTGGGTTTTCCAGAATAATAGTGAAGAAGCTTATCTAATTCTACATTTGAAGCTAAGAATTCTGAAAGAAATAAATAACCCTCCAATGGCTGTGGCTGAGTTGACCGTTGGACTTGATGATCGTGTTAAAGAACTGATGAAATTGTTAGATGTGAAATCCAATGGTTTAAAAGTATTGGGATTATTTGGGATGAGTGGAATTGGTAAGACAACCCTTGCCAAGAGTCTCTTCAACAACCTCGTTGCTCATTTTGAGCGTCGCAGCTTCATTTCAGATGTCAGGGAAGCTTCTTCAACAATGGAAGGTTTAATATGTCTTCAAAATAAGCTTTCTAGTCATCTTTCCTCGGTATCAGTGGCTTCTGTTAATGATATCAACGATGGTGTTGACACAATTAGAAGGATAATTAAACAAAACAAAGTTCTGGTTGTCTTAGATGATGTTAGTGATGTAAAGCAGCTTCATTTTCTGATTGGTAATAGGGAATGGCTTCATAATGGTAGCCGTATTATAATCACCACAAGGGACATACAAGTTTTACCTGAGAGTTATGTAAAGAGTAATGAGCTCTATGAGGTTAAGGAATTGAAGTTCTCTGAAGCACTTGAATTATTCAGCTACCATGCACTGAGAAGAAAGGAACCTACAGAGAACTTTTTGAATCTATCAAATGAAATTGTGTCTCTGACAGGAGGATTACCTTTGGCTTTGGAAGTGTTTGGCTCTTTTTTGTTCGATAAGAGGAGGTTGGAGGAATGGAAGGATGCTCTGGAGAAGCTGAAACAGATTCGTCCAGGGAATCTTCAGGGCGTATTGAAGATCAGTTATGATGGGTTGGATGAACAGGAGAAGTGTATATTCCTTGACATTGCTTGTTTCTTTGTGGGAATGGAAATGGAGAGAGAAGTTGTGATTGATGTATTGAGGGGTTGTGGATTTAAGGGAGAGATAGCAATGACAGTGCTCATAAATAAATGTCTGATCAAAATCACAAAGGATAATGCCCTGTGGATGCATGATCAGATTAGAGACATGGGAAGGCAATTCGTTATAGATGAAAACCTTGATGCCGGTAAGCGTAGTAGATTGTGGGATCGGTCTTCAATCATGGCTGTTTTGAAGGGTAAAAAGGGAACAAGATGTATCGAAGGGATTGTTCTGGATTTTACAAAGAAAAGAATGTGTATGCCGAGTGATCGCCGTGCTGATGAAATTACCTGGGATCACTTTCGACAAAAGCCCAGTTGTAATTCTGCATCAGCATACATGATAGAAAGGTACAAGAAATATGTCGATGATCGAGCAGAGAAAGCACGAAGGTTGAAATTTCAGACAAAGCACTTCCAGCCATTGGTTGGCTTGAGACTTCTTCAAATCAATTATTCGAGATTGGAAGGAAAATTCAGATGCCTTCCTCCGGGATTAAAGTGGTTACAATGGAAACAATGTCCATTGAGAAATATTCCTTCCGACTCCGTTCCTTCAGAACTTGCTGTGCTTGATCTATCCGAAAGCCACATCAAAACAGTGTGGGGCAGGCATAGGAATAAGGTGTGCGAGAACCTAATGGTTTTGAATCTCTCCAGTTGCGGCAGTTTGAAAGCAATTCCTGATTTAACTGGGTATTCATCTCTAGAAAAGATTGATCTAGGGTCATGCAGTAATTTAAGTAAGATTCATGAATCTATTGGGAATTTGAGCTCATTAGTCCACTTGAACATGCGTAATTGCATGAACCTTCTTGGATTACCCAGTGATGTCTCCGGGCTGAAACGTCTTGAGAGCCTTGTTCTTTCTGGTTGCAGCAAATTGGGAGCACTACCAAAGGACATAAGCTGCATGGTCTCATTAAGAAAACTTCTTGTTGATGACACTGCCATAAGTGAGCTACCTGAATCCATTTTCCACCTCACAAAACTTCAAAAATTGAGTGCTTATCGTTGCCATTCACTGAAGAGGCTTCCCACCTGCATCGGGAAACTAAGCTCTTTGCTTGAGTTATCTCTTGACCATACTGCATTGGAGGAATTGCCTGATTCTATTGGGTCTTTGAAAAACCTTGGGAAGCTTGGCTTGATGGGGTGTAAATCTCTGACTATGATTCCTGATTCTGTTGGGAAACTAGAATCATTGACACAATTGCTTTTGAATGGAAGTGGGATTATGGAGTTGCCTGCTTCCATCGGCTCCTTATCATATTTAAGGGACTTGACTCTTGGTGACTGCATGCTGCTTGTCAAATTGCCTGAATCTATAGAAGCATTGGTTTCTATTTCCGAGCTTCAGTTAGATGGGACATCAATCACCAGTTTGCCAGATAGCATTGGGGGCATGAAAATGCTAACAAAGCTTGAGATGAGAAATTGTGAGCATCTTAGATTTCTACCTGCAACAATTGGAAGCTTGTCAGCTCTTACAACATTGGACATGTATAATTCTAACATCACTGAGTTGCCAGAATCAATAGGGATGTTGGAAAGTCTTGTCCAGTTTAGATTAGACATGTGCAAACAGCTCCGAAAGCTTCCAGATTCCCTGGGAAACCTAAAATCTTTGCATCAGTTACTGATGAAAGGAACAGCTATTACACGACTACCTGATAGCTTTGGGATGCTTTCAAGCTTGGTAGTTTTAGACATGGAAAGAAGGCCTTATCTTAACATGACTGGAAACTTGTCTAGAACGGCTGATGCTTTAGTTCCTAGTGGACAGGAAGAACCTAATTCAACTGCAATTCTAACTTCTTTCTGTAGTTTAACCTTGCTAGAAGAGTTGAATGCTCATGGCTGGAGAATATATGGTAAAGTTCCTGATGATTTTGAAAAGCTTTCATCACTAGAGATTTTAAATCTTGGCCAGACTTCTATTTGCAGTCTTCCAGCCAACATGAAAGGCCTCTCCTGTCTGAAAAGACTTTTGTTGCCAGATTGTAGGGAGCTCAGGATTCTTCCTCCTCTTCCCTCTAGCTTAACAGAGGTGAATGTTGCAAATTGTACTGCGCTACAATGTATATATGATATCTCAAACTTGGAGTGCTTAGAGGAGCTGAATCTCATAAATTGCAAAAAAGTGGCTGATATTCCAGGTCTCGAACATTTGAAGACCTTGAAGAGACTGTACATGAATGGTTGCCATGGATGTTCCTCCACTGTAAAGAAAAGGTTTTCCAAGGTTCTGATGAAAAATTTAGAGATTTTGATCATGCCCGGAAGCAAAATCCCAGATTGGTTTTCAGGAGAAGTAGTAAGCTTTTCCAAGCGGAGAAACCGTCAGCTCTGGGGTATCATTTTTGGTGGGGTGCTTTCTTTCAATAACATACTCGAAAACCAACTAGATGACCTGCAATTGTTGGATGTTAAAGCAATGATCCTCAACTCGACTTATGTTGTATATAAAACAACGTTTCGCCTGCTAGGAATACCTAGGACAAACGAAGATCACATTTTTTTGCGCCGGTTTAGAGATGAACATCCATTGGTTTTTCAGGTAAAAGATGGATATAAATTGCAATTGACAAAACAAGACCCAGCCTACGTTCGAGGGCTTGAGCTGAAAAAATGTGGAATTTATCTAGTCTTTGAAGGCGATGATGGTTATCAAGGAGATGAAGGATCGCTGGACGAAGGGCAGCATTCTATTTCACATAGGTTATCGAAGTTCTTCAATACTGTGTGA 4137 0.4162 MSPEGDVVSSTPGGFRLRWDVFLSFRGADTRTSFINDLYTALYSCGVRVFLDNVGLDRGTEIAPSLFEAIDDSAASIVVFSPNYTESHWCLEELEKICDCRRLILPVFYRVAPWDVRNQEGPFKKYFKNHENRFGKETVIKWRKAMNKVGGISGWVFQNNSEEAYLILHLKLRILKEINNPPMAVAELTVGLDDRVKELMKLLDVKSNGLKVLGLFGMSGIGKTTLAKSLFNNLVAHFERRSFISDVREASSTMEGLICLQNKLSSHLSSVSVASVNDINDGVDTIRRIIKQNKVLVVLDDVSDVKQLHFLIGNREWLHNGSRIIITTRDIQVLPESYVKSNELYEVKELKFSEALELFSYHALRRKEPTENFLNLSNEIVSLTGGLPLALEVFGSFLFDKRRLEEWKDALEKLKQIRPGNLQGVLKISYDGLDEQEKCIFLDIACFFVGMEMEREVVIDVLRGCGFKGEIAMTVLINKCLIKITKDNALWMHDQIRDMGRQFVIDENLDAGKRSRLWDRSSIMAVLKGKKGTRCIEGIVLDFTKKRMCMPSDRRADEITWDHFRQKPSCNSASAYMIERYKKYVDDRAEKARRLKFQTKHFQPLVGLRLLQINYSRLEGKFRCLPPGLKWLQWKQCPLRNIPSDSVPSELAVLDLSESHIKTVWGRHRNKVCENLMVLNLSSCGSLKAIPDLTGYSSLEKIDLGSCSNLSKIHESIGNLSSLVHLNMRNCMNLLGLPSDVSGLKRLESLVLSGCSKLGALPKDISCMVSLRKLLVDDTAISELPESIFHLTKLQKLSAYRCHSLKRLPTCIGKLSSLLELSLDHTALEELPDSIGSLKNLGKLGLMGCKSLTMIPDSVGKLESLTQLLLNGSGIMELPASIGSLSYLRDLTLGDCMLLVKLPESIEALVSISELQLDGTSITSLPDSIGGMKMLTKLEMRNCEHLRFLPATIGSLSALTTLDMYNSNITELPESIGMLESLVQFRLDMCKQLRKLPDSLGNLKSLHQLLMKGTAITRLPDSFGMLSSLVVLDMERRPYLNMTGNLSRTADALVPSGQEEPNSTAILTSFCSLTLLEELNAHGWRIYGKVPDDFEKLSSLEILNLGQTSICSLPANMKGLSCLKRLLLPDCRELRILPPLPSSLTEVNVANCTALQCIYDISNLECLEELNLINCKKVADIPGLEHLKTLKRLYMNGCHGCSSTVKKRFSKVLMKNLEILIMPGSKIPDWFSGEVVSFSKRRNRQLWGIIFGGVLSFNNILENQLDDLQLLDVKAMILNSTYVVYKTTFRLLGIPRTNEDHIFLRRFRDEHPLVFQVKDGYKLQLTKQDPAYVRGLELKKCGIYLVFEGDDGYQGDEGSLDEGQHSISHRLSKFFNTV 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1643 1378 ProSiteProfiles TIR domain profile. 17 178 IPR000157 GO:0007165
Dere09g1643 1378 Gene3D - 350 440 IPR042197 -
Dere09g1643 1378 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 155 IPR035897 -
Dere09g1643 1378 Gene3D - 180 341 IPR027417 -
Dere09g1643 1378 Gene3D Ribonuclease Inhibitor 758 1042 IPR032675 -
Dere09g1643 1378 SMART till_3 18 152 IPR000157 GO:0007165
Dere09g1643 1378 PRINTS Disease resistance protein signature 212 227 - -
Dere09g1643 1378 PRINTS Disease resistance protein signature 384 398 - -
Dere09g1643 1378 PRINTS Disease resistance protein signature 289 303 - -
Dere09g1643 1378 PRINTS Disease resistance protein signature 742 758 - -
Dere09g1643 1378 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 180 - -
Dere09g1643 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 444 IPR027417 -
Dere09g1643 1378 Gene3D Ribonuclease Inhibitor 1043 1281 IPR032675 -
Dere09g1643 1378 Gene3D - 17 179 IPR035897 -
Dere09g1643 1378 Pfam NB-ARC domain 194 420 IPR002182 GO:0043531
Dere09g1643 1378 Pfam TIR domain 19 174 IPR000157 GO:0007165
Dere09g1643 1378 Gene3D Ribonuclease Inhibitor 593 757 IPR032675 -
Dere09g1643 1378 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 810 IPR044974 GO:0006952
Dere09g1643 1378 SUPERFAMILY L domain-like 492 923 - -
Dere09g1643 1378 SUPERFAMILY L domain-like 900 1228 - -
Dere09g1643 1378 SMART LRR_typ_2 956 979 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 768 791 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 909 932 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 1097 1119 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 1003 1025 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 862 885 IPR003591 -
Dere09g1643 1378 SMART LRR_typ_2 815 838 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1643 Dere-ChrDere09 21009975 21016035 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1643 19 895 WRKY Transcription Factor Family AT4G12020 29.576 1.38e-83 301