Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1626 ATGGGATCGAAAAGCACGTCGCAGATTGAGTGTGAGGCAAAGGAGAAACCTCATGGACTGAACTTGCCCTTAAGAATGGCAAGGGGACCTCACATGGGGAAGACAAGATGTGTAATACCAAAAACCCTTGATCCAACATTTGTCAATATCTATGTCTCTTCCTTCTCATCTGGCGACACTTCCACATGGGCTCAGCAATGGAGGCGTCCACAGAGTTGGGGGGGCAGTGAGTGCATACGGCTGTTGCCTCTGGGTCTGTCTGTCAGTCTGTCTGTTTCATTAGGTGATGGCTCTGTCACTAATCTGCCACGAAACATGCTTGTTGTGGAGGAGGACTCTGCAGTTCGGCAACTTCAGGATCACTTTGTAAATTTTCGCGTCCATGATTTTGAATGTTATCGGAGTTGGAAGCATGATTTGGAGTTGAAGAGAGCGAGAGCTTTTTCTTTTCTGGGTTCTTGTTACTTGTTAGAGATGAAGAGGTCTAGAGACGATGGTTATGTGAGCTCTCAACTCAAACGGCCCATGATGTCTTCACGAGGAGAAGCCCCGGGGCAACCCCAGATGATGGGTGGAGGTGCTCAGAAACTCACAACAAACGATGCCCTACAATATCTCAAGGCAGTCAAGGAAATGTTTCATGATAAGAGGGAAAAGTATGATGACTTTTTGGAGGTCATGAAAAATTTCAAGGCACAAAGAATTGATACTGCGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTTAATACCTTCTTGCCTAAGGGATATGAAATCACGCTTCCACTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGAAGAAGCCATAAATTTTGTGAACAAAATTAAGACTAGGTTTCAAGGCGATGATCATGTCTACAAGTCTTTTCTAGACATATTGAATATGTATAGGAAGGAAAACAAGTCTATCACCGAGGTCTATCAGGAGGTTGCTGCACTTTTCCAAGACCACCAAGACCTTCTTGTTGAGTTTACTCACTTTCTTCCGGATGCTTCAGCAGCAGCTTCTGCACATTATGCTCAATCTGCTCGGAATTCTTTGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGCGGCCAATGCATGTCGACAAGAGGGAAAGGACCATAGCTTCACATGATCATGACCTTAGTGTTGATCGTCCTGATCCAGATCATGACAGAGGTTTTATGAGGACAGAAAAGGAGCTGAGGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGATAGAGACAGGAGAGAGCAGGAGCGTGATGATAGAGATTACGAGCAGTATAATAGTAGGGACTTCAATATGCAACATTACCCTCACAAACGGAAAGGTGGTGGTAGGGCTGATGATTTTGGTGCTGAACATCAAGAAGCTGATGCTGATGAAAGTTTTAGTCTGCGCCATATGTCATCCCCTTGTGATGATAAAACTTCTGTGAAAAGTATGTACAGTCAGGAGTTTGCCTTTTGCGATAAAGTTAAGGAGAAATTACGGAATCCTGATGATTATCAGGAGTTTTTAAAGTGCCTACACATCTATAGCAGGGAAATAATTACGCGACAAGAATTGCAGTCATTGGTGGGTGATTTACTGGGAAAGTATCCTGACCTTATGGAGGGGTTTAATGAATTTTTAGCTCGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTCATGAATAAAAAATCCTTATGGACTGAAGGACATGCACCAAAATCAATGAAGGCAGAGGACAGGGATAGAGATAGAGATCATGATCGTGGTCGGGATGATGGGATGAAAGAAAGGGATCGCGAATACCGAGAAAGGGACAAATCAGGTGCAACTGCCAACAAGGATGTTTCAGGTTCTAAGATGTCTATATATAACTCCAAGGATAAGTATATGGCAAAACCTATAAATGAGCTGGACCTTTCCAACTGTGAGCGATGCACTCCTAGTTACCGGCTCCTACCAAAAAATTACCCAATACCTATAGCTAGCCAGAGAACAGAGCTTGGGGCTGAAGTATTGAATGATCACTGGGTGTCTGTAACGTCTGGAAGTGAAGATTATTCTTTTAAACACATGCGTAAAAACCAGTATGAAGAGAGCTTATTTAGATGTGAAGATGACAGATTTGAACTTGATATGCTGTTAGAGTCAGTGAATGTGACAACAAAGCGAGTAGAAGAGCTCTTAGATAAGATCAATAATAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACATCTTTAAATCTAAGGTGCATTGAACGTCTATATGGTGATCATGGGCTTGATGTGATGGATGTGTTAAGAAAGAATGCGCCTTTAGCTTTGCCAGTCATATTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATACAAAAAGCTTGAGCACAAAAGCCTTGTTGGCCGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGGCCCGTTCTTCCAAATTTGGAATATGAGTATTCTGATCCAAATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACAACTGAGCAGTTAGATAAAGTTATGAAGATTTGGATAACATTCATAGAGCCCATGCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTTTGTCAAAAATGGCACTGCAAGTATTGCAGAGAGCGATGGTAGTACAGGGGGTGGTGCTACCCTAATGAATCTTAAACAACTAAGTACTTCTAGAAATGGGGATGAGAGTACTCCATTAGAACAGTCAAACTCTAGTAAAGCATGGCAAATGAATGGGGATAGTGGGATTAAAGATGACAACTGTCTTGATGCAGACCATTCCACACGGAAGACTGAAACTTTGGGCAGTAGTACACAGCTTTGTAAAATGCATATTAGTGCATCCATGCCTGATGGAGGATCAGGAGTCAATAAGCAAGATCATTCCAATGACCGGTTACTGAATGCTAATGCTTCACTTACCTCAGGAATGGAGCACAGTAATGGAAGAACATGCATTGATAATGCATCAGGGCTTACTACTACTCAATCTAGACCAGCTGTCGAGGGAACACTTAATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACCAGGTACATCCACAAATGGGGCCTTCACTGAAGCCACCAAAGTCCAAAGATACCAAGAAGAATCTGTTGGACACTTTAAAGGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCAGCTTACAGAGATGCTGGTTTGGAGGCAATGAATAAAGGAAAGGATGGTGGTATAATACAGCAGTACCAAAATAGACATGGAGAAGTAGTTTGTGGTGAAGCAGGAGGAGAAAATGATGCCGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATTAGAGGACAGTGAAAATGCATCTGAAAATGGCAATGTTTCTGGTAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGTGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCTGATGCCAATGATGTTGAAGGAGATGGAACCCCATTGCCATTTTCAGAACGCTTTTTACTTACTGTAAAGCCTCTGGCAAAGTATGTTCCTGCAGTGTTGCACGAGAAAGAAAGAAATTCTCAGATTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGACTACACCAGACATTATATGAGAGGATACAATCAGCAAAAATTAATTCTTCATCTGCTGAAAAAAAGTGGAGGGCTTCAAATGAAACAAATTCTGCTGATCAATATGGCAGGTTCATGAATGCCCTTTACAGTTTACTTGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAAATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAAAACATATATCGAATTGAATGTTCATCTACACCAACCCGATTATCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACTGCTGTGTCAATGGACCCAAATTTTTCAGCCTACCTGCACAACGACTTTCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCAGGAATCTACTTGAAGAGGAATAAACGTAGATATTCATGTGGTGATGAGTATTCAAGCCAGGCCTTGGAAGGATTACAAATTAATAATGGTCTGGAATGTAAAATAGCTTGCAATTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTATTTCGGATGAGAAGGAAAAGGAAAACCTTGCATCAGAACAGTTCATGCCATGAACAGGCGAAGTCCTCAAACATTTCTTCGAGCAGAGCACAGCGGTTTCACAGATTATTTTCTGCTACATGA 4764 0.4137 MGSKSTSQIECEAKEKPHGLNLPLRMARGPHMGKTRCVIPKTLDPTFVNIYVSSFSSGDTSTWAQQWRRPQSWGGSECIRLLPLGLSVSLSVSLGDGSVTNLPRNMLVVEEDSAVRQLQDHFVNFRVHDFECYRSWKHDLELKRARAFSFLGSCYLLEMKRSRDDGYVSSQLKRPMMSSRGEAPGQPQMMGGGAQKLTTNDALQYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRSSAMPTVRPMHVDKRERTIASHDHDLSVDRPDPDHDRGFMRTEKELRRRGEKEKDRREDRDRREQERDDRDYEQYNSRDFNMQHYPHKRKGGGRADDFGAEHQEADADESFSLRHMSSPCDDKTSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLARCEKNDGFLAGVMNKKSLWTEGHAPKSMKAEDRDRDRDHDRGRDDGMKERDREYRERDKSGATANKDVSGSKMSIYNSKDKYMAKPINELDLSNCERCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNIIKGDSPIRIEEHLTSLNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPVLPNLEYEYSDPNIHEDLYQLIKYSCGEVCTTEQLDKVMKIWITFIEPMLGVPSRPQGAEDTEDVVKAKNNFVKNGTASIAESDGSTGGGATLMNLKQLSTSRNGDESTPLEQSNSSKAWQMNGDSGIKDDNCLDADHSTRKTETLGSSTQLCKMHISASMPDGGSGVNKQDHSNDRLLNANASLTSGMEHSNGRTCIDNASGLTTTQSRPAVEGTLNLPSSEGGDSTRPGTSTNGAFTEATKVQRYQEESVGHFKGEREEGELSPNGDFEEDNFAAYRDAGLEAMNKGKDGGIIQQYQNRHGEVVCGEAGGENDADADDEGEESPHRSLEDSENASENGNVSGSESADGEECSREEHEDGEHDNKAESEGEAEGMADANDVEGDGTPLPFSERFLLTVKPLAKYVPAVLHEKERNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAEKKWRASNETNSADQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYTYEKSRKPGRFVDIVYHENARVLLHDENIYRIECSSTPTRLSIQLMDYGHDKPELTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRRYSCGDEYSSQALEGLQINNGLECKIACNSSKVSYVLDTEDFLFRMRRKRKTLHQNSSCHEQAKSSNISSSRAQRFHRLFSAT 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1626 1587 Gene3D Paired amphipathic helix 279 352 IPR036600 GO:0006355
Dere09g1626 1587 Pfam Sin3 family co-repressor 660 751 IPR013194 -
Dere09g1626 1587 ProSiteProfiles PAH domain profile. 497 566 IPR003822 GO:0006355
Dere09g1626 1587 FunFam Paired amphipathic helix protein Sin3 201 263 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 1128 1145 - -
Dere09g1626 1587 Pfam Paired amphipathic helix repeat 304 348 IPR003822 GO:0006355
Dere09g1626 1587 Pfam Paired amphipathic helix repeat 519 563 IPR003822 GO:0006355
Dere09g1626 1587 Pfam Paired amphipathic helix repeat 218 262 IPR003822 GO:0006355
Dere09g1626 1587 Gene3D Paired amphipathic helix 495 568 IPR036600 GO:0006355
Dere09g1626 1587 PANTHER SIN3B-RELATED 195 1445 IPR039774 GO:0003714
Dere09g1626 1587 MobiDBLite consensus disorder prediction 1080 1152 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 366 469 - -
Dere09g1626 1587 SMART hdac_interact2seq4b 658 758 IPR013194 -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 1080 1127 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 585 634 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 1188 1268 - -
Dere09g1626 1587 Gene3D Paired amphipathic helix 201 263 IPR036600 GO:0006355
Dere09g1626 1587 FunFam Paired amphipathic helix protein SIN3 495 568 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 981 1002 - -
Dere09g1626 1587 ProSiteProfiles PAH domain profile. 281 351 IPR003822 GO:0006355
Dere09g1626 1587 SUPERFAMILY PAH2 domain 277 350 IPR036600 GO:0006355
Dere09g1626 1587 FunFam Paired amphipathic helix SIN3-like protein 280 351 - -
Dere09g1626 1587 MobiDBLite consensus disorder prediction 589 627 - -
Dere09g1626 1587 SUPERFAMILY PAH2 domain 195 264 IPR036600 GO:0006355
Dere09g1626 1587 ProSiteProfiles PAH domain profile. 195 265 IPR003822 GO:0006355
Dere09g1626 1587 MobiDBLite consensus disorder prediction 380 469 - -
Dere09g1626 1587 SUPERFAMILY PAH2 domain 496 564 IPR036600 GO:0006355
Dere09g1626 1587 MobiDBLite consensus disorder prediction 1230 1254 - -
Dere09g1626 1587 Pfam C-terminal domain of Sin3a protein 1301 1547 IPR031693 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1626 Dere-ChrDere09 20801516 20817906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1626 191 300 WRKY Transcription Factor Family AT4G12020 50.909 1.36e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere09g1626 Sin3a_C 1.1e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1626 09 20801516 20817906 Dere13g1278 13 17613603 17622658 CCT
Dere09g1626 09 20801516 20817906 Dere09g1626 09 20801516 20817906 ECH