Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1622 ATGTCTCGCACGTGCTCGCAGTGTGGCAACAACGGCCACAACTCCCGCACATGCACCCACGGCGGGGGAGGCGGCGGCGATGGTTCTTCCCAAGAGAACGGGATTATGCTGTTCGGCGTACGACTCACCGAAGGGAACTCGTTCAGGAAGAGCGCTAGTATGACGAATCTCTCGCAGTATGAGGTTCAGCCTCAGGATTCCAACGCCGTCGACGCTGGTTACGCTTCCGACGACGTCGTTCATGCCTCAGGACGCAGCCGCGAGCGCAAGAGAGGTGTTCCGTGGACGGAGGAAGAGCATAAGCTATTCCTGCTGGGATTACATAAAGTCGGGAAAGGAGATTGGAGAGGGATTTCTAAGAACTTCGTGAAAACTCGGACGCCGACTCAGGTGGCAAGTCATGCTCAGAAGTACTTCCTCCGTCGCCATAACCAGAACCGGAGACGCCGGAGATCTAGTCTTTTTGACATTACCACCGACACGGTGATGGAATCCTCTTTAATGGAAGAAGAACAAGTCCACCAAGAAACAGCGATACCACCAACACATCCACAGTCACATTTCGGCGGCTTCCCCGGTTCAACTTTTCCGTTGAAGACGGTGGCCGGAGAGCGATCAGGGAAGCCTATTAGGCCCACGGCGATCCTGCCAATTCCTCCATCTTCGAAAATGGCTACTCTAAACTTGAAAGAGAAAGCTCTGATGGACCCCTTACCCCTATCGCTGAAGCTGCCGACGCCGCCGTCAACGTCAAAAGAGCAGTCGCCGTCAAGCAGCCACTCATCGCCGACGGGTTTTGAGGCCATGTCCGGCAAGTTCAGCGGCGGTGGAGACAGCATAATCAGCGTGGCTTGA 855 0.552 MSRTCSQCGNNGHNSRTCTHGGGGGGDGSSQENGIMLFGVRLTEGNSFRKSASMTNLSQYEVQPQDSNAVDAGYASDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISKNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSLMEEEQVHQETAIPPTHPQSHFGGFPGSTFPLKTVAGERSGKPIRPTAILPIPPSSKMATLNLKEKALMDPLPLSLKLPTPPSTSKEQSPSSSHSSPTGFEAMSGKFSGGGDSIISVA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1622 284 MobiDBLite consensus disorder prediction 245 268 - -
Dere09g1622 284 MobiDBLite consensus disorder prediction 238 284 - -
Dere09g1622 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Dere09g1622 284 CDD SANT 94 139 IPR001005 -
Dere09g1622 284 MobiDBLite consensus disorder prediction 175 217 - -
Dere09g1622 284 PANTHER TRANSCRIPTION FACTOR KUA1 1 244 - -
Dere09g1622 284 Gene3D - 93 144 - -
Dere09g1622 284 FunFam transcription factor MYB1R1 93 144 - -
Dere09g1622 284 SUPERFAMILY Homeodomain-like 89 142 IPR009057 -
Dere09g1622 284 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Dere09g1622 284 MobiDBLite consensus disorder prediction 1 18 - -
Dere09g1622 284 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Dere09g1622 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Dere09g1622 284 ProSiteProfiles Zinc finger CCHC-type profile. 5 18 IPR001878 GO:0003676|GO:0008270
Dere09g1622 284 SMART sant 91 141 IPR001005 -
Dere09g1622 284 MobiDBLite consensus disorder prediction 1 30 - -
Dere09g1622 284 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1622 Dere-ChrDere09 20746828 20747888 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere09g1622 Myb_DNA-binding 4.2e-12 CL0123