Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1618 ATGATGCACCCCCATACACCTAGCCCCACCCAAAGAAAAATTCAGGTTGTTGGAAAATGTGCTGTAGAGTATTCTTCTCATGTAACTTCACTTGCTCCATACGTACTCTCTCCGAGATTCCCATGTTATGTACATGTAGATAAAGCCAGAGTCATCATGCCATTTGGGCTAGTCTCAGCTTGGAACAAGCGCCGTAGAAGCAAGTCACAGGATCACACAGACCCCTGGATATATAAACCTGTGGAGTTCTGGCAGCTTGATGATCAGACACCTCAGTCAACAAAGAGGAGGCATGGATCATCTGTCTTCACGCTCAAGGAGATGGAAGAGGCATCATTTTCATTCAGTGATGATAATCTGCTTGGAAAAGGAGGATTTGGAAAAGTCTACAGGGGTACTTTGCGTTCTGGGGAGGTTGTAGCAATCAAGAAAATGGAACTGCCAGCATTCAAAGAAGCAGAGGGAGAGCGTGAGTTCCGCGTGGAAGTGGACATCTTGAGCAGACTGGACCACCCAAATCTTGTTTCCTTGATTGGCTATTGTGCTGATGGTAAGCACAGATTCCTGGTTTACGAGTATATGCATAATGGAAACCTGCAAGATCATTTAAATGGCATTGGAGAAAGAAAAATGGATTGGCCTCTGAGACTAAAAGTGGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCAAGTTGTGCTGTTGGAATTCCTATTGTTCACAGAGATTTTAAATCCACCAATGTTCTCTTAAATGCTAACTTCGAAGCAAAGATATCAGATTTTGGGCTTGCCAAGTTGATGCCTGAAGGGCAGGAGACTCATGTGACAGCCAGAGTACTTGGTACCTTCGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTCACTCTACAAAGTGATGTTTACGCTTTTGGCGTTGTTCTTCTTGAGCTTTTGACTGGACGCCGAGCTGTAGACCTAAATCAGGGTCCAAATGATCAAAACCTTGTATTACAGGTGAGGCACATACTGAATGACCGCAGGAAGCTCCGTAAGGCGATAGATCCAGAGCTGGCACGAAATTCTTACACATTTGAGTCTATAGCCATGTTTGCCAATCTGGCATCTCGATGTGTCCGTACAGACAGTAGTGAGAGACCTTCAATGGCAGATTGCGTAAAAGAACTCCAATTGATTATCTATACAAACTCAAGAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1242 0.4428 MMHPHTPSPTQRKIQVVGKCAVEYSSHVTSLAPYVLSPRFPCYVHVDKARVIMPFGLVSAWNKRRRSKSQDHTDPWIYKPVEFWQLDDQTPQSTKRRHGSSVFTLKEMEEASFSFSDDNLLGKGGFGKVYRGTLRSGEVVAIKKMELPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERKMDWPLRLKVALGAAKGLAYLHSSCAVGIPIVHRDFKSTNVLLNANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRRKLRKAIDPELARNSYTFESIAMFANLASRCVRTDSSERPSMADCVKELQLIIYTNSRGLGMVMHSLRMI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1618 413 FunFam serine/threonine-protein kinase PBS1-like 84 193 - -
Dere09g1618 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Dere09g1618 413 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Dere09g1618 413 Gene3D Phosphorylase Kinase; domain 1 83 193 - -
Dere09g1618 413 PANTHER OS01G0750732 PROTEIN 89 397 - -
Dere09g1618 413 ProSiteProfiles Protein kinase domain profile. 115 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1618 413 SUPERFAMILY Protein kinase-like (PK-like) 91 398 IPR011009 -
Dere09g1618 413 FunFam receptor-like serine/threonine-protein kinase NCRK 194 404 - -
Dere09g1618 413 CDD STKc_IRAK 121 395 - -
Dere09g1618 413 Gene3D Transferase(Phosphotransferase) domain 1 194 403 - -
Dere09g1618 413 Pfam Protein kinase domain 116 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1618 Dere-ChrDere09 20708049 20711205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1618 98 392 Receptor kinase-like Gene Family AT3G58690 47.333 1.04e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Dere09g1618 Pkinase 1.8e-49 CL0016