Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1576 ATGATTCAAAAATCAAATGAGTCCAATCGCCGGATTCTGAGCTTCCCGGCGGTTCATCCCTCTGAAGATATTTCTCTTTCAACCCTTCTCGCTTCTCTAATCACTATCTCTGGGAGTATTTGGAGTTTCAGAACCAAAGCTTTCTCCAGCAACAAGAAAAATGCCAGAAACGCCATTCGTAGAATCGAGGTTCTTCAGATTTTTCTAGAAGAGATCCGAGACCAGCAATGGAGTCTTCCGGATTCTGTAATCCTGAGCTTGTCAGAGCTCCATTTGACTTTCCAGAAGCTTCAGTTCCTCCTTGAGGACTGCACTCGTGACGGCTCTCGGCTATATATGCTCATGGAGTCAAATCAGGTCGCGACCCATTTCCGGGTCCTGTCCAGATCCGTAGCCACGGCTTTTGATATATTCCCCTTCAATTTCATAGAAATTTCAATGGAACTTAAAGAGCAGGTCGAGTTGATAATGAAGCAAGCACGAAAGGGCAACGTTGAAGTTGAACCTGAAGACAAAAGAGCAACGATGGGAGTTTTATCGATTTTGAATCAATTTGAGAACTCCATAACTCCAAGTGAGAGTGATCTCAAATGGGTTCTTGATCATATAGGGGTTCGAAGATGGGGTGAGTGTAATAAAGAAATCAAGTTCTTGGATGCAGAAATCGGGTACGAGCGAATGAACGAAGAGAAAGGAAAAATGGCGTTTTTGAGTAGTCTAATGGGGTTCATGAGCTACTGCAGATGCGTAGTGATCGAGGTTGTCGATAATGGAGAAGATGACCGAAAATCTGATTATAGCAAAGAAAGTGAGATCTTGAGTAGGTGCCTCAACCCAAATGATTTTCGATGTCCAATCTCTCTCGAGATCATGAATGATCCGGTGACGATAGAGACGGGTCATACTTATGATCGCTCCTCGATTCTAAAATGGTTTAGCAGTGGAAGCCCCATCTGCCCCAAGACAGGGAAGAGCCTCAGCAGCATCGAACTAGTCCCTAATTTGGTGCTTCGCAGGTTGGTTCATCATTACTGTTCTGAAAACGGCATTCCCATAGCTGATCTGGGTCGGAGGAATCGTGATCGTGACATCACAAAAACTTCTCAGCCTGAAAGTTTGGCAGCACAAGAAGCCATGAAAATGCTGGCAAGTTTTCTCAGTGACAAGCTTCACAACGAAGAAGAGGAAGAGAGAAGCAGAGCTGCTTTCGAGATCCGGGTTCTTTCCAAAACAAGCATCTTCAATAGGACTTGTTTTGTACAATCTGGTGCAATACCATATTTGTTAGGGTTGTTGTTGTCGAGGAATCCAACAACGCAAGAATACGCCATAGCAGCTCTTCTGAACCTCTCGAAACACCCGAAGAGCAGAAGTGTTATAGTTCAGAATTGGGGTGTGGAATTGATTGTGGGTGTTTTAAAGAAAGGGATGAAGTTAGAATCTCGCTATCATGCTGCTGCTACTTTGTATTACCTTGCTTCAGATGAGGAGAATCGAAGATTGATAGGGATGGAGCCAGAAGCAATACTATCTTTGATCAATCTGATCAAAGATGGCTCTGACAGAGGCAAAAAGAATGGCTTGGTTGCTATATTTGGCCTCCTTTTTCACCCTGAAAATCACAAAAGGGTTGTTGAAGCTAAGGCAATTCCTTTGCTGATTAACATCCTAAAAACCTGTGAAAGAGAAGATCTTGTCACAGATTCACTAGCAGTTTTGGCAACTCTAGCAGAGAAAAGTGATGGAACTATGGCAATCCTTCAAAATGGAGCTTTGCATCTAACTGTCGAAAATTTGAATTCATCTTCAACTTCAAGAGTTGGCAAGGAGCACTGTGTGTCTTTATTGCTTTCTCTATCAGTAAATGGAGGAGCAAATGTGGTTGCTCTTCTAGTGAAGAGCCCTTCCCTCATGGGATCCTTATATTCCGTACTCAGTAGAGGCACATCACGAGCAAGCAAGAAGGCCAGTGCTCTCATCAGGGTCCTCCATGATTTTTGTGAGAAGCGGCCCTCTGGATTCAAGACTTCAGTTCTCCCACAAGAACAATTTATTCACATTTGGTAA 2067 0.4349 MIQKSNESNRRILSFPAVHPSEDISLSTLLASLITISGSIWSFRTKAFSSNKKNARNAIRRIEVLQIFLEEIRDQQWSLPDSVILSLSELHLTFQKLQFLLEDCTRDGSRLYMLMESNQVATHFRVLSRSVATAFDIFPFNFIEISMELKEQVELIMKQARKGNVEVEPEDKRATMGVLSILNQFENSITPSESDLKWVLDHIGVRRWGECNKEIKFLDAEIGYERMNEEKGKMAFLSSLMGFMSYCRCVVIEVVDNGEDDRKSDYSKESEILSRCLNPNDFRCPISLEIMNDPVTIETGHTYDRSSILKWFSSGSPICPKTGKSLSSIELVPNLVLRRLVHHYCSENGIPIADLGRRNRDRDITKTSQPESLAAQEAMKMLASFLSDKLHNEEEEERSRAAFEIRVLSKTSIFNRTCFVQSGAIPYLLGLLLSRNPTTQEYAIAALLNLSKHPKSRSVIVQNWGVELIVGVLKKGMKLESRYHAAATLYYLASDEENRRLIGMEPEAILSLINLIKDGSDRGKKNGLVAIFGLLFHPENHKRVVEAKAIPLLINILKTCEREDLVTDSLAVLATLAEKSDGTMAILQNGALHLTVENLNSSSTSRVGKEHCVSLLLSLSVNGGANVVALLVKSPSLMGSLYSVLSRGTSRASKKASALIRVLHDFCEKRPSGFKTSVLPQEQFIHIW 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1576 688 SUPERFAMILY RING/U-box 279 352 - -
Dere09g1576 688 FunFam RING-type E3 ubiquitin transferase 360 674 - -
Dere09g1576 688 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Dere09g1576 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Dere09g1576 688 CDD RING-Ubox_PUB 279 331 IPR045210 -
Dere09g1576 688 Gene3D - 30 142 IPR036537 GO:0007166
Dere09g1576 688 Gene3D - 364 669 IPR011989 -
Dere09g1576 688 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Dere09g1576 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Dere09g1576 688 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Dere09g1576 688 PANTHER U BOX DOMAIN-CONTAINING 50 663 - -
Dere09g1576 688 SMART arm_5 453 494 IPR000225 GO:0005515
Dere09g1576 688 SMART arm_5 537 578 IPR000225 GO:0005515
Dere09g1576 688 SMART arm_5 579 621 IPR000225 GO:0005515
Dere09g1576 688 SMART arm_5 411 452 IPR000225 GO:0005515
Dere09g1576 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Dere09g1576 688 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Dere09g1576 688 SUPERFAMILY ARM repeat 377 663 IPR016024 -
Dere09g1576 688 Pfam Armadillo/beta-catenin-like repeat 419 451 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1576 Dere-ChrDere09 20059239 20061305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1576 1 688 U-box Gene Family AT1G10560 46.439 0.0 606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1576 09 20059239 20061305 Dere09g1576 09 20059239 20061305 ECH