LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1575	ATGAAGTTTCAAAAACAAAACTGCTTGATATTACTTTTTTTGTGCGTCTCCTTTGATCATGTGTATTCTCAAACTTCTGCTGCTGATTGCATCCTTGATATCCAATCTTCTACATCCTTGAATAATAATCATAATCGCTCAGACTGTAAATTGCATAGTTGGGGAGGGTTTATAAATAGCTGTTGTACACTAGATTTTGATGGTTATCTATATGCATTAGGACTGCATGCCAACAAATCTGGAAAAATATACTTGAACTCCTCAGAGCAAGAAACTTGCTTAGCATCAATCCAAGTTTTTGCGAAGAATACTACAGGCTGTGGGGTAGAGAAGCTAACTGCTGGAGCTGGTGGTTGCTCTGATATCTCTGTCAAAGATGTTATGGACAAGTTTGGAGACAAATTGAGAAGATTAGATAAAGATTGTATTCCTTTGAGTTTTGAACGTAGAACAAATGAGACTTGTACTCCATGTTTAAGAAGGTGGGAGGAGATTAGTGCAATATCAGACAGTAAAAGGGTGTCAGTGTCAGCAAATTTTGATGCCAATCTTTGTAGGTTTGCAGTGCTAATCTCACTTACAAGCATCAGACTCTATGACAGAGAGTCAATTCAGGCAGTTTATGAATGCCTTGGGACATACAGCCTTTCAGCAGGTCTCTGGATATTACCCTTTGGCTTTACTGGAATCACAGTCATAGTGCTTCTTGCAGCATGGACCTTGCATAGAAGAAGAACTCGAAGTCCTCCAATAAAACAAGAAGAGACAGAGGACTCAAGCTCTCTTAAGGTAACTGTCAAGGACATTTATATGGCAACCAACAATCTCAGCGCATCAAATTTCATTGGCCAAGGCATGGCTGGAAAAGTGTACAGAGGTATACTCTGCGACGGTCAGCCCGTAGCCATCAAGCATATCATCAATGAAGGGTACCTAGAGACATTTGTTAGAGAAGTGAGAAGTCTTTCCCGTGTCAGACATCCAAACCTAGTATCTTTAGTTGGAAGCTGTGAAAGTGAAGGCAAAGGTAAATTTCTTTCATGGATTCAAAGACTAAAGATTGCTGTTGATAGTGCAAGAGGGCTACTGTTTCTCCACACCTACCCAGGTGGCTGCATTGTTCACCGTGATATTAAGCCATCAAACATTTTAATTGACTCCAACTTGCAAGCAAAACTTTCAGACTTCGGACTGTCCAAGGTAATAGACCTGGGCCAATCGTTCGTGAGCTCTGAGGTGAGAGGAACATTAGGTTACATTGATCCTGAATACCGGAGAAACCATCATGTAAAAGCCTCGGGAGATGTCTACAGTTTTGGAATCGTATTACTGCAACTTCTATCAGGACAGAGGGTCATTAACTTCAATTTCCAGAGTCCAGTGTCCCTAAATAAAATGGCTAGAAATTTTGCTCGAGGTGGAGATATATCAGAATTTGCTGACCCTAAACTCAAAGGAGAGTACTCTGGGGAAGCATTTAGCCTTATACTAAAGCTAGCTGTGTCATGCATTGGCCTTAAGCAACAAAGGCCATCTATGGAGCAAGCGGTACGTTGCCTGGAAAAGGCACTGGAAATCTCGTCACGAGCTAAATCATTCACATCTTTCACTGTGTAA	1617	0.4113	MKFQKQNCLILLFLCVSFDHVYSQTSAADCILDIQSSTSLNNNHNRSDCKLHSWGGFINSCCTLDFDGYLYALGLHANKSGKIYLNSSEQETCLASIQVFAKNTTGCGVEKLTAGAGGCSDISVKDVMDKFGDKLRRLDKDCIPLSFERRTNETCTPCLRRWEEISAISDSKRVSVSANFDANLCRFAVLISLTSIRLYDRESIQAVYECLGTYSLSAGLWILPFGFTGITVIVLLAAWTLHRRRTRSPPIKQEETEDSSSLKVTVKDIYMATNNLSASNFIGQGMAGKVYRGILCDGQPVAIKHIINEGYLETFVREVRSLSRVRHPNLVSLVGSCESEGKGKFLSWIQRLKIAVDSARGLLFLHTYPGGCIVHRDIKPSNILIDSNLQAKLSDFGLSKVIDLGQSFVSSEVRGTLGYIDPEYRRNHHVKASGDVYSFGIVLLQLLSGQRVINFNFQSPVSLNKMARNFARGGDISEFADPKLKGEYSGEAFSLILKLAVSCIGLKQQRPSMEQAVRCLEKALEISSRAKSFTSFTV	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1575	538	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	185	522	-	-
	Dere09g1575	538	Gene3D	Transferase(Phosphotransferase) domain 1	338	536	-	-
	Dere09g1575	538	SMART	serkin_6	276	513	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1575	538	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	373	385	IPR008271	GO:0004672\|GO:0006468
	Dere09g1575	538	ProSiteProfiles	Protein kinase domain profile.	276	524	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1575	538	Gene3D	Transferase(Phosphotransferase) domain 1	258	337	-	-
	Dere09g1575	538	Pfam	SPARK	25	171	IPR043891	-
	Dere09g1575	538	Pfam	Protein tyrosine and serine/threonine kinase	279	341	IPR001245	GO:0004672\|GO:0006468
	Dere09g1575	538	FunFam	probable receptor-like protein kinase At5g59700	336	537	-	-
	Dere09g1575	538	SUPERFAMILY	Protein kinase-like (PK-like)	256	520	IPR011009	-
	Dere09g1575	538	Pfam	Protein kinase domain	353	517	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1575	Dere-ChrDere09	20055838	20058930	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1575	215	521	Receptor kinase-like Gene Family	AT1G70130	34.132	2.85e-49	178

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Dere09g1575		Pkinase	9.6e-24	CL0016