Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1562 ATGGCTTCCAATAGCTCCAACATCGATTCTAATTCAAAATCAAATGGGTTCTCGAATTCCTCTAAATTGTCGATCAAGGCTGCGGCTCCATCGCCAGATTCTCCCTCCTCCTCGAATAATACGAATTCAAAGCCGCATATTTCTCCATCCGCCGCCCCGCCGTCGAATTCTTCCTCCCCTCCGTCGAGTTCGCCTCCGTCGCCGACCACGACGAGTACTCCCCCACCCTCATCCAGCCCGCCGCCGCCGCCTGAAGCTCCACCGCCCGCATCTTCTCCGCCACAATCGTCGCCGCCTCCGTCACCACCACCCTCTTCGCCACCGCCGTCATCCTCTCCTCCCCCTACGCAGTCACCTCCACCACAAGCACATCCCCCACCTCCGCCGAAATCTGAATCCCCACCTCCCCCTGAGAAGTCTTCTCCGCCTTCATCCACACCCACAACTCCACCTCCATCTCCGCCTCCACCGGAGAAGTCACCCAACTCGTCTCCACCACCGACACCAGTGCCCCCAAATAATTCATCGGCCTCCGGTAATGAAACCTTCCGCATACCGTCGGCGCCTCCTCCAACTACTGTTTCCCCTCCAGATGCCATTTCCCCACCGGATACACTCAGCCCCCCTCCGCCACCGCTGCAGTCACCGGGCTTGAAGTCTGGCTCTGCCACACGCTCAAGCGGTACTTCCAGCAGCTCCTCATCCTCGTCATCGTCAGGAGGCGGTGGCAGCGGTGGTAATTCACAAAAATACATTGGTTATGGAGTGGGCGGAGTGTTCGCTTTTATCCTTCTTGCCCTGATTATTGTTTGTTTGGTAAAGAAGAATAGAAAACGAAAAGGGGTCCATGCGACACCTTATGGGGCCTCTAATTTCTTTCCTAGGAGACCAGGCACGGAAGGGCTTTACTATGCACAGCCGCCTGGGATAGCGAATTATGCACAAGAGGGCTTTTATAATTCACAAATCCCAATCTCTCCCAACTATGGAAGTGGGAGTCAAAGAGGAGTTGGGCAACAGTTAGGGGGTCCAGACTCAGGGCCCTGGAGTGCTGGTCAGATATCTTTTAGCTATGAGCAGATTATGGAAATAACTCAAGGATTTTCTGGTGAAAATATTATTGGGGAGGGGGGATTTGGACGTGTGTACAAGGGTTGGCTTTCAAGTGGAAAAGCAGTGGCTGTGAAGCAGCTTAAGGCTGGCAGTGGCCAAGGCGAAAGGGAATTTAGGGCAGAGGTTGAGATTATCAGCCGTGTTCATCACAGGCACTTGGTATCATTAGTTGGTTATTGTATAGCTGATCAGCGAAAGGTGCTCATCTACGAGTTTGTTCCAAATAAAACTCTTGAACATCACTTGCATGCCAGGGGTGTGCCAGTGTTAGACTGGGGCAAGAGAATGAAGATAGCAATTGGCTCCGCAAAAGGCTTAGCATATTTGCATGAAGACTGCAACCCGAAAATAATCCACAGAGATATTAAGTCAGCCAACATACTTCTGGATGATGCGTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGACTAACTGATGATGCTAATACACACGTATCAACTCGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTGACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTCCTCCTTGAGCTCATAACTGGGAGGAAACCAGTTGATCAAACTCGGCCTGTGGGAGAAGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCGACGTGCCATTGAAACCCGAGACTTTAGTGAATTAGTTGATGCAAGGCTTGACACGCAATTTGTGGAGAGTGAGATGTGCAGGATGATTGAAGCTGCTGCAGCCTGTGTTCGCCATTCTGCTCCAAAACGGCCTCGAATGATTCAGGTGGTAAGAGCCTTGGATAGTCAAGATGAATCATGTGATTTATCAAATGGAGTGAAATATGGTCAGAGCACCATTTATGATCCCAGCCAATATAGTGACGACATGATTATGAAATTCAGGAAAATGGCCACCGGAAGCTGTGGTGAATCTGAATTTGATATGAACAGTGGAGAGTACACTTCTTCTTCAGTAGAGTTTTCTGGACAAAGACATGTATGGTCTAAGGGTTATTCAACTGGCGAGTCAGTCTCGAGCTTTCCACGCAAATAG 2178 0.5018 MASNSSNIDSNSKSNGFSNSSKLSIKAAAPSPDSPSSSNNTNSKPHISPSAAPPSNSSSPPSSSPPSPTTTSTPPPSSSPPPPPEAPPPASSPPQSSPPPSPPPSSPPPSSSPPPTQSPPPQAHPPPPPKSESPPPPEKSSPPSSTPTTPPPSPPPPEKSPNSSPPPTPVPPNNSSASGNETFRIPSAPPPTTVSPPDAISPPDTLSPPPPPLQSPGLKSGSATRSSGTSSSSSSSSSSGGGGSGGNSQKYIGYGVGGVFAFILLALIIVCLVKKNRKRKGVHATPYGASNFFPRRPGTEGLYYAQPPGIANYAQEGFYNSQIPISPNYGSGSQRGVGQQLGGPDSGPWSAGQISFSYEQIMEITQGFSGENIIGEGGFGRVYKGWLSSGKAVAVKQLKAGSGQGEREFRAEVEIISRVHHRHLVSLVGYCIADQRKVLIYEFVPNKTLEHHLHARGVPVLDWGKRMKIAIGSAKGLAYLHEDCNPKIIHRDIKSANILLDDAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDQTRPVGEESLVEWARPLLRRAIETRDFSELVDARLDTQFVESEMCRMIEAAAACVRHSAPKRPRMIQVVRALDSQDESCDLSNGVKYGQSTIYDPSQYSDDMIMKFRKMATGSCGESEFDMNSGEYTSSSVEFSGQRHVWSKGYSTGESVSSFPRK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1562 725 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Dere09g1562 725 MobiDBLite consensus disorder prediction 174 188 - -
Dere09g1562 725 MobiDBLite consensus disorder prediction 217 245 - -
Dere09g1562 725 FunFam Proline-rich receptor-like protein kinase PERK8 344 443 - -
Dere09g1562 725 MobiDBLite consensus disorder prediction 1 53 - -
Dere09g1562 725 ProSiteProfiles Protein kinase domain profile. 368 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1562 725 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 260 683 IPR047117 -
Dere09g1562 725 SMART serkin_6 368 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1562 725 CDD STKc_IRAK 374 642 - -
Dere09g1562 725 SUPERFAMILY Protein kinase-like (PK-like) 348 641 IPR011009 -
Dere09g1562 725 MobiDBLite consensus disorder prediction 54 173 - -
Dere09g1562 725 Gene3D Phosphorylase Kinase; domain 1 346 443 - -
Dere09g1562 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Dere09g1562 725 MobiDBLite consensus disorder prediction 1 245 - -
Dere09g1562 725 Pfam Protein tyrosine and serine/threonine kinase 372 641 IPR001245 GO:0004672|GO:0006468
Dere09g1562 725 FunFam proline-rich receptor-like protein kinase PERK8 444 656 - -
Dere09g1562 725 MobiDBLite consensus disorder prediction 189 216 - -
Dere09g1562 725 Gene3D Transferase(Phosphotransferase) domain 1 444 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1562 Dere-ChrDere09 19923312 19928018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1562 237 696 Trihelix Transcription Factor Family AT1G70460 62.876 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere09g1562 PK_Tyr_Ser-Thr 5.8e-47 CL0016