Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1561 ATGCTTAGGTTTCATCGACGCAAGTTCCTTCTCCTTCATTGTGTAGATACACCGAAACAGAGAGAACTCTGGCGAGACAGAACAAAACCTCAAAAAGCTAACTACGCCAAAAGCAGATTTGCAGTAGTGGGAGGAGACACAGGAATGACAGGTTTGGGGGAAGCAGCAGTGGAGTGGTTCAGAACCTTGGTTGAGACAAAGGCTTGGGACTACGTTGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATCGAGTGGATGGGTTGCTGTTGTAGTGGGGGATGTGATAGAAGCAATGAGGAGGTTAAGACCGAAGGGGAAAACGCTGAAGAATACGGATTGAGTCCTAGATGTAGGGATACACACTTTCAGCATCCAGTGAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTCCCCCACACAATGCCACTTTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAACCTAGATGGCTTACTCAGGATTTAACTGGAACGCGAGTTTTGATCCCTATTATCGGTGGTATGATAGAGCTCTTCACAGCAGAGATTATACCAAACGATACACGGATCATAGAGTTCATAACTGCAAACTGCGGCCTCTCTATGAACAAGGAAGCCATTTCAGAACATCCACCATCAGAAGCATACTGTCCTCAAAGCTTGGTTTCTAGCGTACATGTATCTGCGGTAAACCAGTGCAGTTCCCATCCTAGCTTTGAAGGATCCTCCAGTGGGTCAAATCCTTCAAATGAAACGTCAAAAAAGAAACAGAGAGGTCTGGGTTTCCACTGTGGCACTCTGGAAGAGGATAAATCAGAGCTGTTCAGGAAACCTCAAAGGGAAGGCTATACATCTAAAAATCTTGTCATGGAGAGGAATAGGAGGAACAGGATCAAAGATGCGCTCTTTACCCTACGGGCTTTAGTCCCAAAAATAACCAAGATGGATAAGGCATCCATTGTTGGAGATGCCATTGATTATATACAGGAATTGCAAGAACAAGTAAAAATACTTGGAGATGAGATGATATATTTGGAAGAAGAGGATTCTGAGAAGAATACACCACAATTGAGGAGGCCAATAGTGAAGGAAGAAGGAGGAATCAGAAGCTTGCCCCTTAATGAGCTCATCCAAAGCTCTTCTAGTTGCACTAAACAAACTCAGATGGAGGTGCAAGTTGAAGTGAACCAGATTGGCACGAGAGAATTTTTTATTAAGCTATATTGTGAGCAGAAGAGAGGTGGGTTTGCAAGATTGATGGAGGCTATTCATTCGTTTGGACTGCAGGTAGCTCATGCCAATGTGAACACAGTTGGTGGCAAAGTCCTGAATATTCTGACTGTTGAGGCAAATAAGCAGGATATTCATCCGAAGATATTGAGAGAGTATTTAGCTCAGCAAGCTGGTTCTCAGGAAAGAGGAGTTCATGTTGAGTTCAAGAAAGCTTAG 1461 0.4381 MLRFHRRKFLLLHCVDTPKQRELWRDRTKPQKANYAKSRFAVVGGDTGMTGLGEAAVEWFRTLVETKAWDYVVVWKYGDDPTRFIEWMGCCCSGGCDRSNEEVKTEGENAEEYGLSPRCRDTHFQHPVRTKACEALAQLPHTMPLYSGVHGDVAISKQPRWLTQDLTGTRVLIPIIGGMIELFTAEIIPNDTRIIEFITANCGLSMNKEAISEHPPSEAYCPQSLVSSVHVSAVNQCSSHPSFEGSSSGSNPSNETSKKKQRGLGFHCGTLEEDKSELFRKPQREGYTSKNLVMERNRRNRIKDALFTLRALVPKITKMDKASIVGDAIDYIQELQEQVKILGDEMIYLEEEDSEKNTPQLRRPIVKEEGGIRSLPLNELIQSSSSCTKQTQMEVQVEVNQIGTREFFIKLYCEQKRGGFARLMEAIHSFGLQVAHANVNTVGGKVLNILTVEANKQDIHPKILREYLAQQAGSQERGVHVEFKKA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1561 486 Coils Coil 332 352 - -
Dere09g1561 486 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 199 IPR025610 -
Dere09g1561 486 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 189 465 - -
Dere09g1561 486 MobiDBLite consensus disorder prediction 240 259 - -
Dere09g1561 486 Pfam Helix-loop-helix DNA-binding domain 293 336 IPR011598 GO:0046983
Dere09g1561 486 Gene3D - 281 363 IPR036638 GO:0046983
Dere09g1561 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Dere09g1561 486 SMART finulus 292 341 IPR011598 GO:0046983
Dere09g1561 486 MobiDBLite consensus disorder prediction 240 263 - -
Dere09g1561 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 351 IPR036638 GO:0046983
Dere09g1561 486 CDD ACT_UUR-ACR-like 409 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1561 Dere-ChrDere09 19917859 19922500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1561 143 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 32.378 8.46e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1561 bHLH-MYC_N 2.6e-14 CL0161