Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1547 ATGTCAACACTTAACCATCTCTTTAGCCTTCCAGAGCAAATATGTTACGTGCAATGCGGATTCTGTACTACCATTTTAATGGTGAGCGTCCCATGCAGCAGTTTGTCTATGGTGGTGACAGTCAGATGTGGGCATTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCGTTTGTCCCCTTACAACTTTTAGCTTCCTTTACTCATCTTCAGCCAAAAGAAGGTAGTCCAGAAGAGGAAGCAAACAAGACCTTGGACAGCCTTAACCATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTGCTTCCCATGAGCAATGTGGTAAACAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACCGCTTTATCAAAGATGAGATCAGAAGGCTAAAGGCTGAAAACCCAGACATGGCTCACAAGGAAGCTTTTAGCACAGCTGCAAAAAATTGGGCCAATTTCCCACCATCTCACTGCAAAGGAGATGAAGAGAGCTGCAGCCAGACAGAGCAACTTGTGGATCTTGACTCCCATTTGGACCCTCATGAAGACGCTGAGGTTAATGAAGAAGAAGGCCAAGGTTTCCGTGAAAGAAAGTTTCCAAGGAATTCCATCTGGGCAAGGACACCATTTGAGTGA 660 0.45 MSTLNHLFSLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPLQLLASFTHLQPKEGSPEEEANKTLDSLNHNASMMTYSDCEEEDVLPMSNVVNKPPEKRQRTPSAYNRFIKDEIRRLKAENPDMAHKEAFSTAAKNWANFPPSHCKGDEESCSQTEQLVDLDSHLDPHEDAEVNEEEGQGFRERKFPRNSIWARTPFE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1547 219 Pfam YABBY protein 10 166 IPR006780 GO:0007275
Dere09g1547 219 Gene3D High mobility group box domain 110 176 IPR036910 -
Dere09g1547 219 SUPERFAMILY HMG-box 111 163 IPR036910 -
Dere09g1547 219 MobiDBLite consensus disorder prediction 189 219 - -
Dere09g1547 219 FunFam Axial regulator YABBY 4 110 176 - -
Dere09g1547 219 CDD HMG-box_SF 122 164 - -
Dere09g1547 219 MobiDBLite consensus disorder prediction 189 210 - -
Dere09g1547 219 PANTHER PROTEIN YABBY 6-RELATED 2 178 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1547 Dere-ChrDere09 19828672 19830598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1547 2 219 C2C2-YABBY Transcription Factor Family AT1G23420 57.642 2.02e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere09g1547 YABBY 1.5e-64 CL0114