Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1546 ATGATCATCAATCGACGACGGCGAAAATTGGCGTGGGCAAGCATGCAAATCTTCGTGAAGACCCTAACGGGGAAGACTATAACCCTCGAGGTTGAGTCTTCCGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCAACGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGAACCCTAGCTGACTACAACATCCAGAAGGAATCCACCCTTCATCTCGTGCTCCGCCTCCGTGGTGGCGCCAAGAAGCGAAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTTCTCCAGTTCTACAAGGTCGATGATTCTGGTAAGGTTCAGAGGCTGAGGAAGGAGTGCCCGAATGCCGAGTGTGGTGCTGGTACTTTCATGGCCAATCATTTCGACCGCCATTATTGCGGCAAGTGTGGCATGACTTATGTCTACCAGAAGGCTGGTGGGGATTAG 513 0.5283 MIINRRRRKLAWASMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGMTYVYQKAGGD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1546 170 SUPERFAMILY Zn-binding ribosomal proteins 114 167 IPR011332 GO:0006412
Dere09g1546 170 SMART ubq_7 15 86 IPR000626 GO:0005515
Dere09g1546 170 CDD Ubl_ubiquitin 15 90 - -
Dere09g1546 170 SMART Ribosomal_S27_2 116 161 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere09g1546 170 SUPERFAMILY Ubiquitin-like 15 107 IPR029071 -
Dere09g1546 170 ProSiteProfiles Ubiquitin domain profile. 15 90 IPR000626 GO:0005515
Dere09g1546 170 FunFam Ubiquitin-40S ribosomal protein S27a 15 93 - -
Dere09g1546 170 ProSitePatterns Ubiquitin domain signature. 41 66 IPR019954 -
Dere09g1546 170 Pfam Ubiquitin family 17 88 IPR000626 GO:0005515
Dere09g1546 170 PANTHER UBIQUITIN 15 103 - -
Dere09g1546 170 Pfam Ribosomal protein S27a 116 161 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere09g1546 170 Gene3D - 15 94 - -
Dere09g1546 170 Gene3D - 95 168 IPR038582 -
Dere09g1546 170 PRINTS Ubiquitin signature 25 45 IPR019956 -
Dere09g1546 170 PRINTS Ubiquitin signature 67 88 IPR019956 -
Dere09g1546 170 PRINTS Ubiquitin signature 46 66 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1546 Dere-ChrDere09 19822997 19824040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1546 15 168 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.455 3.55e-91 261