Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1536 ATGGAGGAAATGTACGGAGTTCCAACGTCTACGGCGGAGTATTCGGACACGGCCTTTATCACGGCGGAGAATCTGATCTTTCCGGCCGACTACCAGGGCATACTCATGTCTTCTTCTGCAGCACCAGGCTTCCGTGATCAGATTCCGATTTTCGGATCCGACGAGTTGCTCTCCGCTGCTTCCGCGATTACGGAAGTTGAGGCCTCCTTCGCTGCTCCCGAATTTCGGCCACAAAATGATTCTTCCTCTGTGATCAAAGCCAAAATCGCATCTCATCCTCACTATCCTCGTCTCGTTCAAGCTTACATCGATTGCCAGAAGGTAGGAGCGCCTCCGGAAATAGCGTGTTTGTTAGATGAAGTCCGGCGAGAATTCGAACTTTGTAAGCGTGACGTTGTTTCCACGTGCTATGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACGTACTGCGACATGCTGTTGAAGTATAAATCTGATCTTGCCCGGCCTTTTGATGAAGCAACCTCCTTCCTCAACAAGATTGAAACCCAGCTCAGCAACCTCTGCACTGGTGCTTCCGTTCTAAGCCTTTCCGACGATGGGGGTGGGTCTTCGGAAGAAGATTTAAGTACCGGCGATGGTGACGCTCAAGATGGTCAAGGGAGGGGTGAAGACCGAGAGCTTAAGGACAGGCTTTTGCGCAAGTTTGGCAGTCGCATTAGTTCTTTGAAATTGGAGTTCTCAAAGAAGAAGAAGAAGGGTAAGCTACCGAAAGAAGCCAGGAAATCACTGCTTGAGTGGTGGAGTGTTCACTACAAGTGGCCTTACCCAACGGAAGCTGATAAGATTGCACTGGCTAAGTCAACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTCATTAATCAGAGAAAGCGCCACTGGAAACCATCTGAGAACATCATGCAGTTTTCCTCCATGGATAATCTGACTGGTCGGTTCTTTACTGATGAATGA 978 0.4918 MEEMYGVPTSTAEYSDTAFITAENLIFPADYQGILMSSSAAPGFRDQIPIFGSDELLSAASAITEVEASFAAPEFRPQNDSSSVIKAKIASHPHYPRLVQAYIDCQKVGAPPEIACLLDEVRREFELCKRDVVSTCYGADPELDEFMETYCDMLLKYKSDLARPFDEATSFLNKIETQLSNLCTGASVLSLSDDGGGSSEEDLSTGDGDAQDGQGRGEDRELKDRLLRKFGSRISSLKLEFSKKKKKGKLPKEARKSLLEWWSVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENIMQFSSMDNLTGRFFTDE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1536 325 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Dere09g1536 325 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
Dere09g1536 325 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677|GO:0005634
Dere09g1536 325 SUPERFAMILY Homeodomain-like 242 314 IPR009057 -
Dere09g1536 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 311 - -
Dere09g1536 325 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Dere09g1536 325 Pfam ELK domain 221 242 IPR005539 GO:0003677
Dere09g1536 325 SMART ELK_2 221 242 IPR005539 GO:0003677
Dere09g1536 325 SMART HOX_1 243 308 IPR001356 GO:0003677
Dere09g1536 325 Pfam KNOX1 domain 85 126 IPR005540 GO:0003677|GO:0005634
Dere09g1536 325 CDD homeodomain 267 305 IPR001356 GO:0003677
Dere09g1536 325 ProSitePatterns 'Homeobox' domain signature. 279 302 IPR017970 GO:0000981|GO:0006355
Dere09g1536 325 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Dere09g1536 325 Gene3D - 239 315 - -
Dere09g1536 325 MobiDBLite consensus disorder prediction 192 219 - -
Dere09g1536 325 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1536 Dere-ChrDere09 19713692 19724017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1536 1 325 Homeobox Transcription Factor Family AT1G23380 66.168 4.40e-146 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere09g1536 KNOX2 6.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1536 09 19713692 19724017 Dere13g1156 13 15989996 15994972 CCT
Dere09g1536 09 19713692 19724017 Dere09g1536 09 19713692 19724017 ECH