Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1509 ATGGCTTTGCTTCTCGGTGGTTATCAACCTCAGTTACTGTCTTCAGTCTGCCACAAACATAATACTAAGCCTTTAATCAGAGTTTCTTACCAACGCTTCCATTTCGCCGCTAACACTAGAATTCGACCTGTTCTGTTCACTCCTGCTTTCAGTTCCAGGCGCGTTCTGCTAAGTCCTCCAAAGTCATCGTCCGTAGATGGGGTTTCCGTTCCGAACATTCTAGATGTTTCGGGGGCAGACCATAGGGAAGACTACGACGACAATGTTGAGTTTCTGGAGAGGCTTAGGAAATGGATTGGTTTCCTTCCTTCGATTTTGCCCGGTGGAAGCTGGTGGAACTTCTCCGATGAAGTTGAGGTTCAGGTTTTGGCCAAGCCGGTGACCGTTTGGCTCGCGCTTTCCAAAATGTGGGAACTTGTTGCTGAAGACCGCTGGGTTATTTTCTCGGCGTTCTCGGCTCTGATTCTTGCAGCGGTTTCGGAGATTGCCATACCACATTTTTTGACTGCAACCGTCTTCTCCGCTCAGGCCGCAGAAATTACAGTCTTCCGACGGAATGTTCGTCTCTTGGTTCTATTGTGTATGACTTCGGGAATATGCAGTGGAATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTTTGGTCAAGAGGATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGATTCTGAAACAGTTGGCGATTTGACAAGCAGGCTTGGAGCAGATTGTCAACAAGTGTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAACAGGTGCATTGATCTACCTGATAATTTTGTCTTGGCCACTTGGTTTATGTACATTGGTTATATGCACTATACTATCAGCAGTTATGCTAATTTATGGAAGGTACCAGAAAAGAGCTGCGAAGTTGATCCAAGAAGTCACTGCTTCTGCAAATGAAGTAGCTCAAGAAACATTCTCTCTCATTAGGACTGTCCGTGTACATGGAACAGAAGGAGAAGAACTTGGAAGATACAAATGGTGGCTGCGGAACTTAGCCGATATAAGCTTGCGGCAAAGTGCTGCATATGGATTTTGGAATTTCAGTTTCAACACTCTTTATCATTCAACTCAGGTTATTGCTGTGCTGTTTGGAGGAATTTCCATTCTAGCTGGTCATATTACAGCTGAGAAACTTACCAAGTTCATTCTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTTGGAGACAATATATCCTCTTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTTCATTTGATGGATCTCTTGCCAAGCAGGCAATTCATTGCAAAAGGGGTAAAGTTGCAGAGATTAATGGGGCATATTGAGTTTATAGATGTTTCTTTTCACTACCCTTCAAGGCCAACGGTAGCTGTAGTGCAAAATGTAAGCTTTTCTGTTCATCCTAGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTGTTGCTCCGTCTATATGAGCCAACAAATGGTCAGATTTTGATTGACGGCTACCCTCTTAAAGAGTTGGACATCAAGTGGTGGAGAGAAAGAATTGGATTTGTGGGACAGGAACCGAAGCTCTTCCGCATGGATATTAGTTCAAACATCAGATATGGATGTGCTCGAGATGTAAAGCAGGAGGATGTTGAATGGGCTGCCAAGCAGGCTTATGCTCATGACTTTATCTCTGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCAAGGGCCATTCTTAGGGACCCAACTATTTTGATCCTTGATGAAGCCACTAGTGCGCTGGATGCTGAGAGTGAACATAATGTTAAGGGTGTTCTTCGATCTGTCAGAAGTGATTCCACGACAAGGAGAAGCGTCATAGTCATTGCACACAGGCTTTCTACCATAAAAGCAGCTGATAGGATTGTGGTAATGGATGGTGGTCGAGTTGTGGAGGATGGAAGTCACAGAGAACTTCTCTTAAAAGATGGATTGTATGCACGATTGACTAGAAAACAGGCTGACGCAGTGTCTTGA 2127 0.4344 MALLLGGYQPQLLSSVCHKHNTKPLIRVSYQRFHFAANTRIRPVLFTPAFSSRRVLLSPPKSSSVDGVSVPNILDVSGADHREDYDDNVEFLERLRKWIGFLPSILPGGSWWNFSDEVEVQVLAKPVTVWLALSKMWELVAEDRWVIFSAFSALILAAVSEIAIPHFLTATVFSAQAAEITVFRRNVRLLVLLCMTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALIYLIILSWPLGLCTLVICTILSAVMLIYGRYQKRAAKLIQEVTASANEVAQETFSLIRTVRVHGTEGEELGRYKWWLRNLADISLRQSAAYGFWNFSFNTLYHSTQVIAVLFGGISILAGHITAEKLTKFILYSEWLIYSTWWVGDNISSLMQSVGASEKVFHLMDLLPSRQFIAKGVKLQRLMGHIEFIDVSFHYPSRPTVAVVQNVSFSVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGYPLKELDIKWWRERIGFVGQEPKLFRMDISSNIRYGCARDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNVKGVLRSVRSDSTTRRSVIVIAHRLSTIKAADRIVVMDGGRVVEDGSHRELLLKDGLYARLTRKQADAVS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1509 708 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 150 429 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere09g1509 708 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 702 IPR003439 GO:0005524
Dere09g1509 708 Gene3D ABC transporter type 1, transmembrane domain 124 293 IPR036640 GO:0005524|GO:0016020
Dere09g1509 708 SMART AAA_5 490 679 IPR003593 GO:0016887
Dere09g1509 708 FunFam ABC transporter B family member 26, chloroplastic 129 448 - -
Dere09g1509 708 SUPERFAMILY ABC transporter transmembrane region 135 445 IPR036640 GO:0005524|GO:0016020
Dere09g1509 708 Pfam ABC transporter 482 629 IPR003439 GO:0005524
Dere09g1509 708 FunFam Multidrug ABC transporter ATP-binding protein 455 707 - -
Dere09g1509 708 Gene3D ABC transporter type 1, transmembrane domain 294 460 IPR036640 GO:0005524|GO:0016020
Dere09g1509 708 CDD ABC_6TM_TAP 150 437 - -
Dere09g1509 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 703 IPR027417 -
Dere09g1509 708 Gene3D - 461 704 IPR027417 -
Dere09g1509 708 Pfam ABC transporter transmembrane region 151 414 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere09g1509 708 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524|GO:0016887
Dere09g1509 708 PANTHER ABC TRANSPORTER B FAMILY 141 700 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1509 Dere-ChrDere09 19296521 19303897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1509 218 706 Calmodulin-binding Proteins AT2G36910 34.337 1.97e-72 254