Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g1500 | ATGGATGAAGCACTTAGGCGCATCAACGGGCTCGAACCGACTGACTCCGTCTCCGACCACAAGAAGAAGAGTGCAACCGCCGCCAACAAGAGGGCATTGAAAGACAACGGCGGCGCAATGAGGTACCGTGGAGTGAGGCGGAGGCCGTGGGGCCGTTACGCCGCCGAGATAAGGGACCCACAGTCAAAGGAGCGGCGCTGGCTCGGCACCTTTGACACGGCTGAGGAAGCCGCTTCCGCTTACGACTGCGCCGCTAGGGCGATGCGTGGCCTTAAGGCTCGCACCAACTTCGTCTACCCAAGTCCCCTTCCTCCCAACTCTCTTCCTCACCATCTCTTTCCTTCTTCTTTCAACTTTTCCAAACAATCTCAGCCGTCCATCAGTTTTAACAAGAACCTCCTTAACGGCAACGTGGGAGCTTCTAATTGGTCAAATCCTCATACTTGTTCAACCCTGGGAAACTCTGACCTCAACGTGCTTCTGTACCCTCATGTCATCAACCCTTCTTTGTTGGGTTCTTCTTCGTCTTCTTCATCTTCCACCTTTCCCACGTGTAATTGTTCCCAAGGTTGCTGTTTGGCGAATTCTTCTGGTGGCCATACTGCTAATAATAACAAGTACGGATCTGCTTCCGTCACGATGAACACCACCCATCATGATGGAATAACCAAAAATTATAGTGAAGTTGGTGATGACTTTGATTTCTTTCCAAAAGAAGGTTCAGACTCGGGGTTGTTGGAGGAGATCGTTCTTAAATTCTTGCCGACATCGAAGCCTGGCAAATATGAGACTCCACCAGAGTTACCACTTGAGCCTCAGCCTCAGCCAGTAGTGCCCGATCCCATGTTCGTTTCCACCTCTCAATGCTATAACGAAACCAAGAAAGAGGGTTTTGGTGTCTCTTTTGACCACCAAGGTTTTCTTCCCATGCAACAACAGTTTGAGAGTTTTAATGGGCAGGCTATGCATTTCGGCAACGGTCAGTTGATGAACACTGCAGAGTCCTCAATCACGCAAGATATTGTTCGTTACCAAGAGTTTCTTAATGCTTTTGCAGCGAGGATCCAAAATGCTTAA | 1077 | 0.494 | MDEALRRINGLEPTDSVSDHKKKSATAANKRALKDNGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAASAYDCAARAMRGLKARTNFVYPSPLPPNSLPHHLFPSSFNFSKQSQPSISFNKNLLNGNVGASNWSNPHTCSTLGNSDLNVLLYPHVINPSLLGSSSSSSSSTFPTCNCSQGCCLANSSGGHTANNNKYGSASVTMNTTHHDGITKNYSEVGDDFDFFPKEGSDSGLLEEIVLKFLPTSKPGKYETPPELPLEPQPQPVVPDPMFVSTSQCYNETKKEGFGVSFDHQGFLPMQQQFESFNGQAMHFGNGQLMNTAESSITQDIVRYQEFLNAFAARIQNA | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g1500 | 358 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | Pfam | AP2 domain | 41 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | FunFam | Ethylene-responsive transcription factor 2 | 40 | 99 | - | - | |
| Dere09g1500 | 358 | CDD | AP2 | 41 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Dere09g1500 | 358 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 24 | 200 | - | - | |
| Dere09g1500 | 358 | SUPERFAMILY | DNA-binding domain | 41 | 98 | IPR016177 | GO:0003677 | |
| Dere09g1500 | 358 | Gene3D | AP2/ERF domain | 40 | 99 | IPR036955 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere09g1500 | 358 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g1500 | Dere-ChrDere09 | 19196887 | 19197963 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere09g1500 | 1 | 267 | AP2-EREBP Transcription Factor Family | AT1G24590 | 36.042 | 1.42e-38 | 138 |
Transcription factors information