Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1489 ATGGTGGGTCCCACCTCACGTCAGTTCGTTCCAGGTACGGGAATGCGTGCGCTCAGGAACGCCCTGATATTGACTCGCAGGGTTTCAGTGTTTGTCAAATTGCCATCGGCGTTTGGCATAGCGCGTGAGAGAATTGGTGGGCTTAGGCATTCTCGCTTTCTCTTCGACGCAAAATACACACTACAATTTCGCTTTCGAGTTTCGATTTATTTGAATTCCACGGAGGAAGCAATGGATTTCGAGGAGCAAGAGGAGGAACTGGGGATGGGCCCCGCAGGGAGTTACGACTCGATGGGAAACCCGACCCGGGTGAAAATGGCGAGCGCGGGAGACGTGGTGGTGGTTCAGGCGGCGAGGAATAGTAACAGTAAGGCCAGGTATAGGGAGTGCTTGAAGAACCATGCGGTGAGCATCGGGGGTCACGCGCTCGACGGTTGCGGGGAGTTTCTGCCGGCTGGAGCAGAAGGCACGTTGGACGCCCTCAAATGCGCCGCTTGTAACTGCCACCGCAATTTCCACCGCAAAGAAACGGACGCGATCGGTGTGGGAGTAGGGGACCCGTATTTGTTGGCCCACCATCCCCACCACCACCAGCATCAGCCGCCTCAGTTCTCGCCGTATTACCGGACGGCGCCAGCTGGGTATTTACACGTGGGAGGACAGCAGAGGGGGGCGACGCTGGCGTTGCCGTCGACATCAGGAGCAGGGGGTGGGACCCAGAGCACGAGGGATGATCAAGAGGACGTTTCGAATCCGAGTGCAGGTGGAGGAGGGGAAGGGTCGAAGAAGCGGTTCAGGACGAAGTTCACGCAGGAGCAAAAGGACAAAATGCTAGCTTTGGCGGAGAGGCTGGGTTGGAGGATTCAGAAGCACGACGAGGCGGTGGTCCAGCAGTTCTGTAACGAGACGGGCGTGAAGCGTCACGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 978 0.5695 MVGPTSRQFVPGTGMRALRNALILTRRVSVFVKLPSAFGIARERIGGLRHSRFLFDAKYTLQFRFRVSIYLNSTEEAMDFEEQEEELGMGPAGSYDSMGNPTRVKMASAGDVVVVQAARNSNSKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTLDALKCAACNCHRNFHRKETDAIGVGVGDPYLLAHHPHHHQHQPPQFSPYYRTAPAGYLHVGGQQRGATLALPSTSGAGGGTQSTRDDQEDVSNPSAGGGGEGSKKRFRTKFTQEQKDKMLALAERLGWRIQKHDEAVVQQFCNETGVKRHVLKVWMHNNKHTLGKKP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1489 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 116 321 - -
Dere09g1489 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 127 176 IPR006456 -
Dere09g1489 325 SUPERFAMILY Homeodomain-like 253 323 IPR009057 -
Dere09g1489 325 Gene3D - 247 322 - -
Dere09g1489 325 Pfam ZF-HD protein dimerisation region 125 177 IPR006456 -
Dere09g1489 325 MobiDBLite consensus disorder prediction 226 249 - -
Dere09g1489 325 MobiDBLite consensus disorder prediction 226 265 - -
Dere09g1489 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 126 176 IPR006456 -
Dere09g1489 325 NCBIfam homeobox domain, ZF-HD class 262 318 IPR006455 -
Dere09g1489 325 FunFam Zinc-finger homeodomain protein 2 249 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1489 Dere-ChrDere09 19076683 19077996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1489 78 321 ZF-HD Transcription Factor Family AT4G24660 51.417 1.25e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere09g1489 ZF-HD_dimer 1.4e-29 No_clan