Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1478 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGATAACGCTACGGCAAGGCAGGTGACCTTCTCGAAGCGACGCAGAGGGCTCTTCAAAAAAGCTGAGGAGCTTTCTGTTCTCTGTGATGCAGATGTTGGTCTCATAGTCTTCAACGCTACTGGGAAGCTCTTCGAGTATTCCAGCTCAAGTATGAAGGAAATACTTGAAAGGCATCACTTGCACTCCAAGAACCTATCAAAGCTAGAACAACCGTCTCTTGAGTTGCAGCTCGTTGAGAACAGCAACTGCACCAGCTTGAGCAAGGAAGTTGCTGAGAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAAGATCTGCAAGGTTTAAATATCGAAGAATTACAGCAACTAGAGAGGTGTCTCGAATCTGGATTGGGCCGTGTAATAGAAAAGAAGGGAGAGAAAATAATGACCGAGATCAATGATCTGCAAAGAAAGGGCATACAATTGATGGAAGAGAACGAGCGATTAAAGCGTCAAGTGGACCAATTATCAACTGGCAAGAGGCAAAATGGTGCCGTGTCCGACATACTCATAAACGAGGAAGGTCAGTCATCGGAATCTGTCACTATCGTCTGCAACTCCTCTGGACCCCCTCAAGACTATGACAGCTCAGACACATCACTCAAGTTGGGGTGA 669 0.4634 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFNATGKLFEYSSSSMKEILERHHLHSKNLSKLEQPSLELQLVENSNCTSLSKEVAEKSRQLRQMRGEDLQGLNIEELQQLERCLESGLGRVIEKKGEKIMTEINDLQRKGIQLMEENERLKRQVDQLSTGKRQNGAVSDILINEEGQSSESVTIVCNSSGPPQDYDSSDTSLKLG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1478 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1478 222 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Dere09g1478 222 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1478 222 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dere09g1478 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dere09g1478 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Dere09g1478 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 MobiDBLite consensus disorder prediction 194 222 - -
Dere09g1478 222 Coils Coil 94 114 - -
Dere09g1478 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 Coils Coil 150 170 - -
Dere09g1478 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g1478 222 FunFam Transcription factor, MADS-box 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1478 Dere-ChrDere09 18898097 18902779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1478 1 222 MADS-box Gene Family AT2G22540 67.234 2.13e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g1478 K-box 3.1e-17 No_clan