LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1474	ATGGCTCTTCCCGGTTCTCTGCAGTTGTCCTTCGGATTGGGACATCGCAGGAACCAGAGCTACAATGAACAACCTTTGAGGGTACTGGAAAGAAGCAAGTTTTCTTTGTTAAGTGCAGATCCTTCATTTCGTTTACCATGCCCGAAACAGGAGTGCTGGAGACTTCAACTCTCTCGCAATATAAACAGGCCAATACAAGCCTTATCTTGCAAATCCCAGGCTTTTAAATGTCATTCTTTCCTAGTACCAGGCCAACCAAATGAACATCCTGTTGTTAAGGTGGCTACCACTGCACTGGCAAGATCCTGTAATGTGTTACAAAGTAATCCTGTTATAGTAAAGCTGATTCCAGCACTTGGCATCATCATATTTGCTATATGGGGTATAAGCCCATTAATGTTTCAAATGAGGAAATCAGTTCTTCAGAGGAGTGACAGTAACTGGAAGAAAAGTAGCACACATTATGTAGTAACTTCTTATCTTCAGCCATTGCTGTTATGGGTTGGAGCTATACTTATTTGCAGAGCTCTGGCACCAGTAGTTCTACCTACAGAAACTGGCCAGATTGTTAAGGAACGGCTTTTGAATTTTGTAAGATCATTGTCAACTGTGCTTTCATTCACCTATTGCTTATCGAGTGTGATTCAACAAGCACAGAAATTCTTTGTCGAGAAGAGTGCTGATGCCAGCGAGACAAGAAATATGAGATTCCAATTTGCTGGCAAAGCTGTGTACTCTGCAGTATGGATTGCTGCCTTTTCATTATTCATGGAACTACTGGGTTTCTCTACTCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTTACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCTAGCATCATGATTCATGCGACTCGGCCTTTTGTGGTGAATGAATGGATTCAAACAAAGATTGAAGGATATGAAGTTTCTGGTACTGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGGGAAGATCGTGAAGCTGTTCACATTCCAAACCACCAGTTTACAGTGAACATTGTGCGAAACCTCAGTCAAAAAACACATTGGCGGATTAAAACCCACTTAGCCATCAGTCATTTGGATATCAGCAAGATTAAAAACATTGTTGCTGACATGCGGAAAGTCTTGGCCAAAAATCCTCAAGTAGAGCAGCAGAGGCTTCACAGGAGAGTATTTCTGGACAATATAAATCCTGAAAATCAAGCTCTCTTGATACTGGTATCTTGTTTTGTCAAGACCTCACATTTTGAAGAGTATTTGCGTGTTAAGGAAACTATACTATTAGATCTTCTCAGAGTAATTGGCCATCACCAGGCTCGACTTGCAACACCAGTTCGTACTCTGCAGAAAATATACAGTAGTGATGACTTGGAGAACATACCCTATGCAGATTCTTTAGTTAGTGGTCCTGGAACAGTGCTTAATCGTCCGTTATTAATGATTGAACCACCTTACAAAATCAACGCTGATGATAAGACAAAAAGCCACAAAACCATGCAAACCAAACATGACACAAAGACAGATGCCAAGGTTGGACCAACAGTGGTTCTAGATTCTAATGTCAGAAAAACTCCTTCGAATTTGTCAGATGCCAAATCTCTGACATCTAACTCTGATGTGAATGGAAGATCTCAGAATGCTGTGTCAGCCATGGTTGATCCTGCAGTGGGTGAAGATGAACCACTAAAACCAGATTCAAATACTACCTTGAAGGGAAAGGTTAGGGTGTCAGATATGTCTGCTTCCAACTCCAAAGCTGGTGGATTGGCATTAGACGATTCAACTCAGGACTTGAACCATAAGCTGAAAACTGACTCCAACAATCTAATATCATCTTCATCGTCTAGCAATGCTGACATAGCAGGTGAGCATCCTATAAATAAACCATCGAAACAGCAAGACGAAAGAAAACCAGCGGGAATGCCTCCAACATCCAGGCCTGCCATTGAAGAAAATATAGTACTTGGTGTTGCATTGGAGGGATCAAAGAGAACACTTCCTATTGAGGATGGGATTGACTCTTCTGTTACAGAGGCAAAGGAAAAGGCTGCATGGCAGGGTGGAAAGAAATCTGCAACGGCTGAGGATGGGAAAGATAATTAA	2136	0.4181	MALPGSLQLSFGLGHRRNQSYNEQPLRVLERSKFSLLSADPSFRLPCPKQECWRLQLSRNINRPIQALSCKSQAFKCHSFLVPGQPNEHPVVKVATTALARSCNVLQSNPVIVKLIPALGIIIFAIWGISPLMFQMRKSVLQRSDSNWKKSSTHYVVTSYLQPLLLWVGAILICRALAPVVLPTETGQIVKERLLNFVRSLSTVLSFTYCLSSVIQQAQKFFVEKSADASETRNMRFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTVNIVRNLSQKTHWRIKTHLAISHLDISKIKNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLRVKETILLDLLRVIGHHQARLATPVRTLQKIYSSDDLENIPYADSLVSGPGTVLNRPLLMIEPPYKINADDKTKSHKTMQTKHDTKTDAKVGPTVVLDSNVRKTPSNLSDAKSLTSNSDVNGRSQNAVSAMVDPAVGEDEPLKPDSNTTLKGKVRVSDMSASNSKAGGLALDDSTQDLNHKLKTDSNNLISSSSSSNADIAGEHPINKPSKQQDERKPAGMPPTSRPAIEENIVLGVALEGSKRTLPIEDGIDSSVTEAKEKAAWQGGKKSATAEDGKDN	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1474	711	Pfam	Mechanosensitive ion channel	242	448	IPR006685	GO:0016020\|GO:0055085
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	500	520	-	-
	Dere09g1474	711	SUPERFAMILY	Sm-like ribonucleoproteins	285	355	IPR010920	-
	Dere09g1474	711	Gene3D	-	196	299	-	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	615	632	-	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	615	661	-	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	530	559	-	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	500	603	-	-
	Dere09g1474	711	Gene3D	-	301	356	IPR023408	-
	Dere09g1474	711	PANTHER	OW CONDUCTANCE MECHANOSENSITIVE CHANNEL	1	701	IPR045042	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	581	601	-	-
	Dere09g1474	711	MobiDBLite	consensus disorder prediction	690	711	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1474	Dere-ChrDere09	18872815	18878384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1474	660	692	Mechanosensitive Ion Channel Family	AT5G10490	74.286	5.80e-06	47.8