Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1468 ATGGCTCGCGCTACTAATTGGCTGTCGTTTTCGTTGTCGCCGATGGAAATGCTGAGGTCCTCCGACTCCCAGTTCGTCCAATACGACAATCTCTCTGCAACTACTAATTCTTCTCACTACTTCATGGATAACTTCTATTCCAATGGCTGGACGAATCTGAAGTTACAGGCCGAGTACTACAACCAAGTAGAGCAAGACGAAAGCAGAGGGAGCTTGATGGCCCCACACAATCACAACCAAGGGGTGCCGAAGCTCGAAGACTTCTTGGGTTACTCCGATAGCCAAACGGAGACCCAAGATTCGACGTTGACGAACTTATACGAGCAGGGAGGTGGTGGGTCGGGCTACCTCGGCGACCCACGAGATCTGAAAGCAATCGCTGGGGTTCATGCTTTCTCAGCGAACTCTGGCTCCGAGGTGGATGACTCGGCATCCGTTGCGAAAACTTCTCAGGCAGCTTGCGGTGAGCTTGCGATTGAGTCTTCCGGGAACGACGTGGCGTTCTCTGGGTGCGCCACGGGTGCTTTGTCTCTGGGTGTCGCACAAAGTAATGAGAAAGCCGTAGTTGCGGGGTACTCCAGCAGTTCAAAGAAGGTGGCCGATACTTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACCAGACACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAAGCGAGGAAAGGACGTCAAGGTTCATCTCTCTCTCTCTCTCTCTCTCTCTCAGCATTGGGAGCTTCCATGTATCGAAAACGCATTGATGGACGTAGAGGGGGAGGACGCCTGAGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCTTATGATTTAGCAGCTCTGAAGTACTGGGGTCCCGCAGCTACCACCAACTTTCCTATTTCACATTATACAATGGAATTGGAGGAGATGAAACATGTAACGAGGCAAGAATTTATAGCATCATTGCGAAGGAAAAGTAGCGGTTTTTCTAGGGGTGCTTCTATATACAGGGGCGTAACAAGGCATCATCAGCAGGGTAGATGGCAAGCTAGAATTGGTCGTGTTGCAGGAAACAAAGATCTATACCTTGGAACATTTGCTACTGAGGAGGAAGCAGCAGAGGCATACGATATAGCAGCCATCAAATTTAGAGGTGCAAGTGCTGTGACCAACTTTGAGATGAGTAGATACGATGTGGAGGCTATCATGAAGAGTTCTCTTCCTGTTGGCGGCTCCGCAAAACGCTCCAAGCATTCCACAGAATCAGAGCAGAATGCTCCTCCCAGCAATATTCAGCAACCCCTTTATTCAAACGTCATCAATAGCAGTGGCACTATCGATTTTTCAGCCATGCAACCTGCACTAGCTTCTATCCCTTGTGGGATTCCTTATGACTCTGCAACAGCACATTACCATCACAATCTCTTGCACCATTTTTATCCCACTAGCAACCCTGCAACTGCAGACTCAGCCATATCTACTCCCGCTTTGGCACCGTTATCAGCAATGCCGGCAGCTGCTGAGTTTTTACTGTGGCCTCATCAGCCTTGTTGA 1566 0.4949 MARATNWLSFSLSPMEMLRSSDSQFVQYDNLSATTNSSHYFMDNFYSNGWTNLKLQAEYYNQVEQDESRGSLMAPHNHNQGVPKLEDFLGYSDSQTETQDSTLTNLYEQGGGGSGYLGDPRDLKAIAGVHAFSANSGSEVDDSASVAKTSQAACGELAIESSGNDVAFSGCATGALSLGVAQSNEKAVVAGYSSSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGSSLSLSLSLSALGASMYRKRIDGRRGGGRLSGYDKEEKAARAYDLAALKYWGPAATTNFPISHYTMELEEMKHVTRQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVEAIMKSSLPVGGSAKRSKHSTESEQNAPPSNIQQPLYSNVINSSGTIDFSAMQPALASIPCGIPYDSATAHYHHNLLHHFYPTSNPATADSAISTPALAPLSAMPAAAEFLLWPHQPC 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1468 521 Pfam AP2 domain 339 389 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 Gene3D AP2/ERF domain 209 305 IPR036955 GO:0003700|GO:0006355
Dere09g1468 521 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700|GO:0006355
Dere09g1468 521 MobiDBLite consensus disorder prediction 412 438 - -
Dere09g1468 521 SUPERFAMILY DNA-binding domain 272 305 IPR016177 GO:0003677
Dere09g1468 521 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 CDD AP2 208 305 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 ProSiteProfiles AP2/ERF domain profile. 209 303 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
Dere09g1468 521 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 SMART rav1_2 209 309 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 SMART rav1_2 339 403 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677
Dere09g1468 521 CDD AP2 338 399 IPR001471 GO:0003700|GO:0006355
Dere09g1468 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1468 Dere-ChrDere09 18834559 18838260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1468 76 519 AP2-EREBP Transcription Factor Family AT5G10510 51.880 2.69e-141 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g1468 AP2 2.3e-10 CL0081