Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1467 ATGGATGCAACCCCAACCGAGAAAATCTATGTTTCTGTTCGTGATGATCTGCAAGATGGGATCAAAACCCTGCATTGGGCTCTCAATAAATGGAAATTTCATCCCATTTCGATAGTTATTCTCTACGTGGGTCACAATAATTCCAAGGATTATGTTTATACCCCATTTGGGAAACTCCCAGCAAGATCTGTGAGCGATGAGAAGTTAGCAGTTCTCAGGAAATTAGAGCAAGAGAAAATGGACAAGCTGCTTTCCAAGTACATAGCTTTCTGTGGGAAGGTGCCAGCTGAAATATTTGAAGTTGAGAAATTTGATGAACCCATCCAAAAGCGCATCGTAGACTTGATTTTTGGTCTAGAAATAACCAAACTGGTTATGGGATTTTCATTGATGAAGTCCTCCTGGAAATCAAGAGGCGCCATAAGCGGATTGTTCCATGTTCATCAGCATAAGCCTGACTTCTGTGAACTGTTCATCATCTGTGGAGGGAAACAAGTTTTCCTGAGAGGACAGAACGATGACAAAATCATGGAGGACGATAATGGAGTCATGGTAGCCAGGATGAGAGATAAGGTAACTTTCAAAGATTGGTTAGATAAAATGTTCAGCGAAAGAAACATAGATTCCCCAGATAGTAGAGGCTCTCGTGGATCCGCAACTTCATCAGCAACTATGGAATCCCCTGTTTCACAGAATCAGTGGGAATTCTATCTTCAAGAGATTGAAAGTTATTTCCAGGAGTTGTCGTCTTCTAACTTGGCAGAAGAAAGCTTGGGGCAACAAGACAATGACTTCTCGCAGATTAATCCAATTGAACCAGAGACAAGAGAACAGAACAATTCCAATACGAGTACAGCAGAAAAAATTGAGATCCTAAAAAGTAAACTCAATGAGGCACGCAATATCATCCAATTGAGAAGGAAAGAAGCCAGGGAGAATTTGGATAGACATGCGAAAGCTGAATGGGCTATTTGTTTATGCAACAGTCGGGCTGAAGAACTCGAAAGCAAAATAAAGGAAGAATTGAGTACGAAGGAAGAGTTGGCAAAAGAATTAGAAGCAGAAAAAGATATCATACACGAAACCAGGCGTGATATAGAAGAGAGCAAGAAAAGGCTAAGTTCATTGATGGAGCTTCAATCCGAGCTCACAAACAAGCTTCAGATATCCACAATGACAAGATCACAGGCCGAGATCCAGCTGGAGAAGGCAGCGAAAGCGAGATTTGAGATGATGAGGGAAATCGACGAGCTAAGGAAACAAAGAGACGTGCTGAACAGAAGGATAGAGTTTTGCAAAGACAAGGATGCCATAGGAATGGCCGCGAGGCTGAGCGAACCGAGTCTCAGTTTCAGGGAGTACTCAGCAGAGGAGATCAGGTTGGCCACCGACGACTTCTCCGAGCGCCTGAGGTTGAAGTCCTGCGACGACTGGACCAATGTTTACAGAGGAAGGATCAACCATTCCACTGTAGCAATCAAGATGCTCCGTTCGATTCACGGCTTGTCCCAACAAGATTTCCAAGCCAAGGTGAGACATCTTGGTGATATTCGGCACCCTCATGTGGTTGCTATGGTTGGCTTCTGCACTGAGCTGAAATGCATAGTTCTGGAATATATGCATAACGGCAGCTTGCGAGACACGCTATTTTCCAGGAGAAGAAACCGGCCCTTACGGTGGCAGGACCGAATCAGGATAGCTACTGAAGTTTGCTCGGGCCTGGGCTTTCTTCATGCAGCCCAGCCCAAGCCCATCATACATGGCCACCTAAACCCTTCCAGTGTCCTACTAGATCGCAATCTCGTCGCAAAGATCAAAGGTTTCGGCTCTGACGAATGTAGTGTAAAATCAGACATAGAGGCGTTTGGAGTTTTTATCCTGCATCTCCTGACGGGAAGAAATTGGGCGGGCCTGGTTGAGGAGGAGACGAAGATGGATGGAGAAGCTTTAGTACGGGTTCTGGATGAGATGGCTGGGCCATGGCCGTTGGACGTAGCCCAAAAGCTCGTGGGCTTAGCCATGAGGTGTACGGGCAGTACCCGTGGGCCCGACCCCAACAAAGAATTCAGCATTGCAAGTGTAATGGAAGAACTGAAGAAGATCAGAAAAGAGGCGGGTGAAGTAGCTGCAAGAGGAGAGAGGGCAACGACTGGTGCGGTTGTAGATAGAGAAGAATTGACGGATGTGCCAAGTATGTTCCTGTGTCCAATACTTCAGGATGTGATGAAGAATCCACACTTGGCAGCAGATGGGTTCTCGTATGAGCTAGAAGCAATAGAAGAATGGGTGCAATCGGGGCATGACACGTCACCCATGACAAACTTAAGGCTAAAGCACTCATTTCTTACCCCTAATCACGCCCTTCGCTCCCTAATTCGGGACTGGCAAACCAAAAGATCAGCTAAATTGCAAAATTAA 2418 0.4566 MDATPTEKIYVSVRDDLQDGIKTLHWALNKWKFHPISIVILYVGHNNSKDYVYTPFGKLPARSVSDEKLAVLRKLEQEKMDKLLSKYIAFCGKVPAEIFEVEKFDEPIQKRIVDLIFGLEITKLVMGFSLMKSSWKSRGAISGLFHVHQHKPDFCELFIICGGKQVFLRGQNDDKIMEDDNGVMVARMRDKVTFKDWLDKMFSERNIDSPDSRGSRGSATSSATMESPVSQNQWEFYLQEIESYFQELSSSNLAEESLGQQDNDFSQINPIEPETREQNNSNTSTAEKIEILKSKLNEARNIIQLRRKEARENLDRHAKAEWAICLCNSRAEELESKIKEELSTKEELAKELEAEKDIIHETRRDIEESKKRLSSLMELQSELTNKLQISTMTRSQAEIQLEKAAKARFEMMREIDELRKQRDVLNRRIEFCKDKDAIGMAARLSEPSLSFREYSAEEIRLATDDFSERLRLKSCDDWTNVYRGRINHSTVAIKMLRSIHGLSQQDFQAKVRHLGDIRHPHVVAMVGFCTELKCIVLEYMHNGSLRDTLFSRRRNRPLRWQDRIRIATEVCSGLGFLHAAQPKPIIHGHLNPSSVLLDRNLVAKIKGFGSDECSVKSDIEAFGVFILHLLTGRNWAGLVEEETKMDGEALVRVLDEMAGPWPLDVAQKLVGLAMRCTGSTRGPDPNKEFSIASVMEELKKIRKEAGEVAARGERATTGAVVDREELTDVPSMFLCPILQDVMKNPHLAADGFSYELEAIEEWVQSGHDTSPMTNLRLKHSFLTPNHALRSLIRDWQTKRSAKLQN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1467 805 MobiDBLite consensus disorder prediction 212 227 - -
Dere09g1467 805 Pfam U-box domain 729 799 IPR003613 GO:0004842|GO:0016567
Dere09g1467 805 Gene3D Transferase(Phosphotransferase) domain 1 611 717 - -
Dere09g1467 805 Coils Coil 331 386 - -
Dere09g1467 805 PANTHER OS02G0152300 PROTEIN 9 793 - -
Dere09g1467 805 ProSiteProfiles U-box domain profile. 728 802 IPR003613 GO:0004842|GO:0016567
Dere09g1467 805 SUPERFAMILY RING/U-box 724 802 - -
Dere09g1467 805 CDD RING-Ubox_WDSUB1-like 730 785 - -
Dere09g1467 805 Coils Coil 401 435 - -
Dere09g1467 805 Coils Coil 289 313 - -
Dere09g1467 805 Gene3D Transferase(Phosphotransferase) domain 1 540 610 - -
Dere09g1467 805 MobiDBLite consensus disorder prediction 257 286 - -
Dere09g1467 805 MobiDBLite consensus disorder prediction 208 227 - -
Dere09g1467 805 Pfam Protein tyrosine and serine/threonine kinase 479 609 IPR001245 GO:0004672|GO:0006468
Dere09g1467 805 ProSiteProfiles Protein kinase domain profile. 467 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1467 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 805 IPR013083 -
Dere09g1467 805 SUPERFAMILY Protein kinase-like (PK-like) 450 696 IPR011009 -
Dere09g1467 805 Gene3D Phosphorylase Kinase; domain 1 441 539 - -
Dere09g1467 805 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1467 Dere-ChrDere09 18811862 18815903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1467 7 802 U-box Gene Family AT5G65500 50.000 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere09g1467 PK_Tyr_Ser-Thr 3.2e-21 CL0016