Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1464 ATGTCAAGGTCCTCCCAGTTCGTCCAATACGACAATCCCTCTGCTACTACTAATTCTTCTCACTACTTCATGGATAACTTCTATTCCAATGGCTGGACGAATCTGAAGTCACAGGCCGAGTATTACAACCAAGTAGAGCAAAACGAAAGCAGAGGCAGCTTGATGGGCCAACACTATCAGAACCAAGGGGTTCCGAAGCTCGAAGACTTCTTGGGTTACTCCGATAGCCAAACGGAGACCCAAGATTCGTCGCTGACGCACTTATACGAGCAGGGAGGTGGCGGGTCGGGCTACTTAGGCGACCCGCAAGATCTGAAAGTAATCGCTGGGTTTCAAGCTTTCTCAGCGAACTCTGGCTCCGAGGTGGATGACTCGGCGTCCCTTGTGAAAACCTCTGAGGCAGCTTATGGGAAGCTTGCGATTGAGTACTCCGAGAACGACGTGGCGTTCTCTGGGTCCGCCACGGGTGCTTTGTCTCTGGGTGTCGCACAAAGTCATGAGAAAGCCATGGTTGCGGGGGACTCCGACAGCACAAAGAAGGTGGCCGATACTTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACCAGACACCGATGGACGGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAAGCGAGAAAAGGACGTCAAGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCGCAGCTACCACCAACTTTCCTGTTTCGAATTATACAAAGGAATTGGAGGAGATGAAACATGTAACGAAGCAAGAATTTATTGCATCATTGCGAAGGAAAAGTAGCGGTTTTTCTCGGGGTGCTTCTATATACAGGGGCGTAACAAGGCATCATCAGCAGGGTAGATGGCAAGCTAGAATTGGTCGTGTTGCAGGAAACAAAGATCTATACCTTGGAACATTTGCTACAGAGGAGGAAGCAGCAGAGGCATACGATATAGCAGCCGTCAAATTTAGAGGTGCAAGTGCTGTGACCAACTTTGAGATGAGTAGATACGATGTGGAGGCTATCATGAAGAGTTCTCTTCCTGTTGGCGGCTCTGCAAAGCGCTCAAAGTATTCCCTAGAATCAGAGCAGAATGCTCCTCCCAGCAATATTCGGCAACCCCTTTATTCAAACGTCATCAATAGCAGTGGCACTATCGATTTTTCACCCATTCAACCTGCACTTGCTTCTATCCCATGTGGGATTCCCTTTGACTCTGCAGCAGCGCATTACCATCACAATCTCTTGCACCATTTTTGTCCTACTAGCAACCCTGCAACTGCAGATTCAGCCGAATCTACTCCTGGTTTGGCGCCATTAACTGCGATGCCGCCAGCTGCTGAGTTATTTCTGTGGCCTCATCAGCCGTGTTGA 1419 0.4919 MSRSSQFVQYDNPSATTNSSHYFMDNFYSNGWTNLKSQAEYYNQVEQNESRGSLMGQHYQNQGVPKLEDFLGYSDSQTETQDSSLTHLYEQGGGGSGYLGDPQDLKVIAGFQAFSANSGSEVDDSASLVKTSEAAYGKLAIEYSENDVAFSGSATGALSLGVAQSHEKAMVAGDSDSTKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPAATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAVKFRGASAVTNFEMSRYDVEAIMKSSLPVGGSAKRSKYSLESEQNAPPSNIRQPLYSNVINSSGTIDFSPIQPALASIPCGIPFDSAAAHYHHNLLHHFCPTSNPATADSAESTPGLAPLTAMPPAAELFLWPHQPC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1464 472 ProSiteProfiles AP2/ERF domain profile. 290 348 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 FunFam AP2-like ethylene-responsive transcription factor ANT 190 256 - -
Dere09g1464 472 CDD AP2 289 350 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 ProSiteProfiles AP2/ERF domain profile. 191 254 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 57 387 - -
Dere09g1464 472 Pfam AP2 domain 290 340 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 Pfam AP2 domain 191 246 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 PRINTS Ethylene responsive element binding protein signature 330 350 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 FunFam AP2-like ethylene-responsive transcription factor 289 350 - -
Dere09g1464 472 CDD AP2 190 256 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 SUPERFAMILY DNA-binding domain 289 350 IPR016177 GO:0003677
Dere09g1464 472 SMART rav1_2 290 354 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 SMART rav1_2 191 260 IPR001471 GO:0003700|GO:0006355
Dere09g1464 472 Gene3D AP2/ERF domain 290 350 IPR036955 GO:0003700|GO:0006355
Dere09g1464 472 Gene3D AP2/ERF domain 191 256 IPR036955 GO:0003700|GO:0006355
Dere09g1464 472 SUPERFAMILY DNA-binding domain 190 256 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1464 Dere-ChrDere09 18774522 18778197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1464 58 470 AP2-EREBP Transcription Factor Family AT5G10510 54.871 2.14e-150 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere09g1464 AP2 1.7e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1464 09 18774522 18778197 Dere13g1065 13 14201250 14205645 CCT