Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1454 ATGATGTCAACGCCGGCGACGACGAAAGACGAGAGCCTTGGCTCCGGCTGTCGGAAAAGCACCGCGGCGGCGAGGCAGGTAGAGCAAGGGCTAAAGTGCCCAAGATGTGACTCTCCCAACACCAAATTCTGTTACTACAATAATTACAGCCTGACTCAGCCGAGGCATTTCTGCAAGACATGTCGTAGATACTGGACAAAAGGCGGAGCCTTGCGTAACGTTCCCATAGGGGGTGGCTGCCGGAAGAACAAGAAGCTGAAATCGTCATCGTCATCATCCTCAAGACTCTCAAATGATGGTGGCTTTTCCCCGTCTTCCGTGGACTTTCACCTTGGTGGTACTGCAGCTGGCTTCTTAACCTTCCCTAGGCTGAACCATCACCCTCCAGCCTTTAACCTTGAAGGTACCTCAAGCTCTTTCAATATCGGCTTTAATTACCCATTTAATGGTGGTGTAATTCAGGGCATGAGCTCTATGAACGTTCAGAGTAGCCTTGCTTCTTCAATTGAGTCCCTGAGTTCTATTAACCAAGACTTGCACTGGAAGCTGCAGCAACAGAGACTAGCGACGCTGTTTGGAGGGGATAGTGGCAGTAGTCTGAAAGATAACGGCGCCGTTTCAGGAATTAATCTTGAGAGCCAGAGTCAGAAATTACCACACCCTATCTTGTTTCAGAATCTTGAGATTTCGAAGCCTGCAGAGATCTGTCCCGTTGGTGGGAATTCGACGAGAGATACGCCCACTGAGTGGTTCTTTGGGAGCTCTTATGCTTCTGTGACCCCTACACCAACTACTAGTAGTGGTGGTGGTGGGAATGGGAATGGGCACGATAATGGAAGCAATAACTGGAGTGTTCAAGGTTGGGGTGATGTGCAGCAGCCATACAGTGCTTTGCCCTAG 900 0.4989 MMSTPATTKDESLGSGCRKSTAAARQVEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLKSSSSSSSRLSNDGGFSPSSVDFHLGGTAAGFLTFPRLNHHPPAFNLEGTSSSFNIGFNYPFNGGVIQGMSSMNVQSSLASSIESLSSINQDLHWKLQQQRLATLFGGDSGSSLKDNGAVSGINLESQSQKLPHPILFQNLEISKPAEICPVGGNSTRDTPTEWFFGSSYASVTPTPTTSSGGGGNGNGHDNGSNNWSVQGWGDVQQPYSALP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1454 299 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Dere09g1454 299 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Dere09g1454 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 156 IPR045174 GO:0003700|GO:0006355
Dere09g1454 299 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Dere09g1454 299 MobiDBLite consensus disorder prediction 255 299 - -
Dere09g1454 299 MobiDBLite consensus disorder prediction 255 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1454 Dere-ChrDere09 18610291 18611190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1454 21 299 C2C2-Dof Transcription Factor Family AT5G65590 39.297 4.88e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere09g1454 zf-Dof 7.9e-33 No_clan