Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1442 ATGGCTCGAATTGATATATTGAGAGAGATGAAGAAAGTAGGACATTTGAATAAAAGTGTTTCCTACCTGTGGTGGTTTGGAGTAACTGTTCAGATCTGCTTCTTCCTTGCTTGTTGTTCTGCAGAGTCGACGACCTCCATTAGAAGAGCTTTACGGAAGAATAACATTCCACAACCCTCATCTTCTCCTCCTGCAGTCAAACTGGATGTTGAAGATCGTAATCAGGTTGTGATAGACAATGGACTCGTGCGCGTTACGTTGTCAAGACCAGAGGGTTATGTCCTTGGAATATCGTATAATGGAGTTGACAACGTACTTGAAAATCACAACGAACATGATGATAGAGGGTATCTTGACGTTGTTTGGAATGAAGGTTTTCAGAGAATCCACGGGACGAATTTCTCAGTAATAGAAGAGGACGAAAATCAAGTGGAAGTTTCTTTTTTAAGAACATGGACATCTTCCATGAAAGGATCATCTGTCCCTATAACAATAGATATGAGGTATATAATGCGAAGAGGCGATTCGGGATATTACTCGTACGCAGTCTTTGAACGGTCAGAAGGATTTCCAGCAGTGGAGGTTGATCAAATTAGGATTGTCTACAAGCTCCAACAAAACATGTTCCAGTATATGGCTATATCAGAAAGGAGGCAAAGAACGATGCCAACAGCTGAAGATAGAGAGACGGGGGAGCGACTTGCTTACCCGGAAGCTGTTCTCTTGACCAAAGCAGAGAACCCAGAAATTAGAGGAGAGGTGGATGACAAATACCAGTACTCGTCTATGAACAAAGACAACTGCGTTCATGGATGGATTAGCTCTAATTCTAAAGCAAAGAGAGGGTTCTGGGTAATAACGCCCAGTAATGAGTTTCGAAATGGTGGGCCCCTGAAGCAAGACCTCACATCTCATGTTGGCCCCACCACTCTTGCCATGTTTGTTAGCACCCACTATGCTGGAAAGGCAGTGACGATGAATTTTGAAGAAGGGGAGACTTACAAGAAGGTTTTCGGCCCTGTATTTGTGTACCTTAACTCTGCTTCAAGCAAGGAGGATTTTAATACGCTCTGGTCTGATGCTGTTCGACAGTTCTATAAGGAAATCCGAAGCTGGCCCTACGACTTCCCTCGATCTCCAGATTTCATTCTACCCAATCAACGGGGATCAGTAACTGGAAGATTACTTGTCCGAGACTGGTACGTGAAGGGATGGGGAATTTTAGCTGCTAAGTTTGCTTATGTTGGTCTAGCTTTAGCAGGAGAAAATGGATCATGGCAGAAAGAGAGCAAGGGATATCAATTCTGGACTCAAGCTGACAGCAATGGTTACTTCACAATAAAAAAGGTCGTACCAGGAGACTATAATTTGTATGCCTGGGTTCCTGGCGTTATTGGTGATTACAAATATAATGCTACTATCACCATCACACCAGGCGGTGTCATTAAATTGGGTTCCCTTGTATATAGTCCTCCAAGAAATGGCCCTACCATGTGGGAAATTGGGGTCCCAGATCGTTCAGCTGCAGAGTTCTACGTACCAGACCCTTACCCTAAGCTCATGAACAGACTATTATACCAGAAAGCCCCAAGAGACAAGTTTAGGCAATATGGTCTGTGGGATCGTTACACTGATTTATATCCAGAGAATGATCTAGTTTACAATGTTAGCGTTGATAAGCCCGACAAGAAGTGGTTTTTTGCTCATGTTGCCAGAAGTATAGGAAATCATACATACCAACCAACAACATGGCAGATTAAATTTGAACTTGAAGATGTCCCATCCACAGGAAATTACACACTTCAAGTGGCCTTGGCATCAGCCACGGATGCTAATTTACAGGTTTGGTTCAATGATGCGAGTGATGAATATCATCCCCACTTTGGGACAGGGACGATAGGAAGAGACAACGCAATAGCGAGGCATGGGATCCATGGACTGTATAGGCTGTTCAGCATTGATGTTCCAAGTGACCGATTTAGAAAGGGAAGCAACACTATCTATCTGAAGCAGTCAAAAGCCAACAATTCTTTCCAAGGTGCTATGTATGACTATCTCCGTCTAGAAACACCTCCTAGGATTTGA 2085 0.4336 MARIDILREMKKVGHLNKSVSYLWWFGVTVQICFFLACCSAESTTSIRRALRKNNIPQPSSSPPAVKLDVEDRNQVVIDNGLVRVTLSRPEGYVLGISYNGVDNVLENHNEHDDRGYLDVVWNEGFQRIHGTNFSVIEEDENQVEVSFLRTWTSSMKGSSVPITIDMRYIMRRGDSGYYSYAVFERSEGFPAVEVDQIRIVYKLQQNMFQYMAISERRQRTMPTAEDRETGERLAYPEAVLLTKAENPEIRGEVDDKYQYSSMNKDNCVHGWISSNSKAKRGFWVITPSNEFRNGGPLKQDLTSHVGPTTLAMFVSTHYAGKAVTMNFEEGETYKKVFGPVFVYLNSASSKEDFNTLWSDAVRQFYKEIRSWPYDFPRSPDFILPNQRGSVTGRLLVRDWYVKGWGILAAKFAYVGLALAGENGSWQKESKGYQFWTQADSNGYFTIKKVVPGDYNLYAWVPGVIGDYKYNATITITPGGVIKLGSLVYSPPRNGPTMWEIGVPDRSAAEFYVPDPYPKLMNRLLYQKAPRDKFRQYGLWDRYTDLYPENDLVYNVSVDKPDKKWFFAHVARSIGNHTYQPTTWQIKFELEDVPSTGNYTLQVALASATDANLQVWFNDASDEYHPHFGTGTIGRDNAIARHGIHGLYRLFSIDVPSDRFRKGSNTIYLKQSKANNSFQGAMYDYLRLETPPRI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1442 694 Pfam Polysaccharide lyase family 4, domain II 412 483 IPR029413 -
Dere09g1442 694 Gene3D - 70 363 IPR014718 GO:0030246
Dere09g1442 694 Pfam Rhamnogalacturonate lyase family 58 254 IPR010325 -
Dere09g1442 694 CDD RGL4_N 70 351 - -
Dere09g1442 694 FunFam Rhamnogalacturonate lyase B 385 484 - -
Dere09g1442 694 SUPERFAMILY Galactose-binding domain-like 494 689 IPR008979 -
Dere09g1442 694 CDD RGL4_C 499 689 - -
Dere09g1442 694 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 71 692 - -
Dere09g1442 694 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246
Dere09g1442 694 CDD RGL4_M 387 487 IPR029413 -
Dere09g1442 694 Gene3D - 495 689 - -
Dere09g1442 694 Pfam Polysaccharide lyase family 4, domain III 497 688 IPR029411 -
Dere09g1442 694 Gene3D - 385 484 - -
Dere09g1442 694 SUPERFAMILY Galactose mutarotase-like 71 362 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1442 Dere-ChrDere09 18479765 18485492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1442 32 691 Polysaccharide Lyase AT4G37950 54.179 0.0 703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1442 09 18479765 18485492 Dere13g1038 13 13691278 13696852 CCT