Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1435 ATGGGCAGAGGGAAGATTGTGATCCGAAGGATCGACAACTCTACGAGCAGGCAAGTGACTTTTTCAAAGAGGAGGAAGGGGTTGATCAAGAAGGCAAAAGAGCTAGCAATCCTGTGTGATGCCGAAGTTGGACTTGTGATATTCTCCAGCACTGGAAAGCTTTATGAATATACAAACACCAGCATGAAATCACTGATTGAGAGATATAACATGTGCAAGGAGGAACATCAACAACTGATAAATCCAGAATCAGAAGTCAAGTTTTGGCAAAGGGAGGCGGAAGTATTAAGGCAGCAACTACAGAATCTACAAGAAAATCATCGGCAATTGATGGGCGAACAGCTTTATGGTTTAAGTGTGAAAAATCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCGAGGTGTTCGCATGAAAAAGGAACAAATTCTAACAGATGAAATTCGAGAGCTAAATCGAAAGGGAATCACTATCCATCAGGAAAATTTGGAACTCTATAAGAAGGTAAACCTAATTCAACAAGAAAACATGCAACTATACAAGAAGGTTTATGGCACAACGGAGGTGGTCGCAGCAAGCAGAGATGCATTCAGTCCATACGGATTTCATGCCGGACAGGATCCACAAGAACTGATCCAACTGCAGCTAAGCCAGCCTGAGCAAGATGCGTATGAGACATCAGGCAGTGCAACAAAATGA 702 0.4231 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEYTNTSMKSLIERYNMCKEEHQQLINPESEVKFWQREAEVLRQQLQNLQENHRQLMGEQLYGLSVKNLQDLENQLEMSLRGVRMKKEQILTDEIRELNRKGITIHQENLELYKKVNLIQQENMQLYKKVYGTTEVVAASRDAFSPYGFHAGQDPQELIQLQLSQPEQDAYETSGSATK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1435 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1435 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere09g1435 233 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Dere09g1435 233 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Dere09g1435 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 Coils Coil 123 143 - -
Dere09g1435 233 Coils Coil 86 113 - -
Dere09g1435 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1435 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere09g1435 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Dere09g1435 233 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1435 Dere-ChrDere09 18394368 18403343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1435 1 231 MADS-box Gene Family AT2G22630 63.519 8.06e-101 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g1435 K-box 3.9e-25 No_clan