Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1428 ATGGCTCGTCAACCAAATGACCGTCGTGATCATGAAACTGTGGTTGACATTAGGAGACCCGTTAACTTCACAGGTGGGCTTGAGTTTTCAGGCCTCACCTACACTGTGACAAAGAAGAAGAAGGTTGACAAGAGCTGGGTGAAGGAGGATGTGAACTTGCTTCATGATATTACTGGGTATGCACCAAAGGGTTGTATCACAGCTGTGATGGGTCCTAGTGGTGCAGGAAAGTCTACTTTTTTGGATGGCCTTGCTGGAAGAATTGCAAGCGGGAGCCTTAAGGGAGGGGTGTCCTTGGATGGCATAGCTACCACCCCAAGTTTGATCAAAAGAACTTCTGCTTATATCATGCAGGATGATAGGCTTTTCCCTATGCTCACTGTCTATGAAACTTTTATGTTTGCTGCTGATTTTCGACTAGGCCCACTTTCCCTCGCTGATAAGAAGCAGAGAGTGGAGAAGCTCATTGAGCAGCTTGGCTTATCATCAACTCGAAATACCTACATAGGAGACGAAGGGACGAGAGGAGTGTCAGGGGGAGAGAGACGTCGAGTCTCAATTGGTGTGGACATCATCCACGGACCATCGCTTCTGTTTCTAGACGAGCCCACTTCGGGTCTGGACTCCACCAGTGCACACAGCGTGATCGAGAAGGTTCACGACATTGCACGCAGCGGAAGCACAGTGATTCTCACCATCCACCAGCCATCCTCCAGAATCCAAATGCTTCTGGATCACCTCATCATCCTGGCCAGAGGGCAGCTCATGTTTCAAGGGTCACCCAAAGATGTTGGTCTCCATTTGGGTCGCATGGGACGGAAGGTCCCAAAGGGTGAGAACCCAATTGAGCATCTCATTGATGTGATTCAGGATTATGATCAGTGTGAGGTCGGAGTTGGAGCACTCGCTGAGTTTGCATGTACAGGGCTGAAACCCCCTCCTTTGTCTGACCAGGAACTGTCCCTTTCTTCTGTTGCACCGTCAATCCCAGCTCGAAACCCTCGCCACGTGGATAGATCTGCCGTGGATGATTTTGATCACAGCGTGAGAAGCCCTTATACACCCAGGTCGTGGAGTGCCAGCACTAGTGGAGTGTTTCGAAAGTTTACACCTTCCCGGCTTAAGAATGAGCAAAGAGCGCAGAATCCTATAAGTAATGCGTCACCTGGGTCCTACACATACTCAAGCGAGATCCTCGCAGCCACTCCAACGCCACACAGCAGCGACTACACAGTGAATGAGAACGACTACCTCACTCCTCCAGACGGCATTCCCAAACATCTGGGTCCAAAATTCGCAAACTCGTTCTTGCAGGAGACTTGGATTCTGATGCGCCGGAACTTCATAAACATCCGGCGAACTCCTGAGCTTTTCCTCTCCCGACTGATGGTGCTCACAGTCATGGGCTTCATGATGGCCACCATGTTCAAGAGCCCCAAAGCAGACCTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACTGTCTGCCTCTTCTTCTTCTCCTCCAACGACGCCGTCCCGGCTTTCATCCAAGAGCGCTTCATTTTCATCCGAGAAACTTCCCACAATGCTTACAGAACCTCCTCCTACACCATCGCTGGCCTAGTCACCCACACCCCTTTTCTTCTTCTGCAAGCTACCGTCTACGCACTCATCGTTTGGTTTGCTTTGAAGCTCCGAGGCCTTTTTATATACTTCGTGGTTGTTCTCTTCGTTTCCCTTCTCACAACCAACTCGTTTGTTGTGTTCGTGAGCTCAGTGGTTCCAAACTACATCCTGGGTTATGCTGCTGTTATTGCTTTCACTGCTCTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCAAGGACATTCCTATATATTGGCGTTGGATGAACAAAATTTCGACCATGACATACCCTTATGAGGGGCTTTTGATGAACCAGTATCAGACCAAAGAAGTGTTTGGGGCAAACGTGGATGGGTCATTCATTAGAGGTCTCGATATCTTGAACGGCCTTCACATTAGTACTGATTCGTTTAAGAAGTGGGAAAATGTGTTTATAATGTTGATTTGGGCTGTGATATATAGGATTTTGTTTTACTTGATACTTCGTTTTGCATCGAAAAACCAGAGATCGTAG 2130 0.4854 MARQPNDRRDHETVVDIRRPVNFTGGLEFSGLTYTVTKKKKVDKSWVKEDVNLLHDITGYAPKGCITAVMGPSGAGKSTFLDGLAGRIASGSLKGGVSLDGIATTPSLIKRTSAYIMQDDRLFPMLTVYETFMFAADFRLGPLSLADKKQRVEKLIEQLGLSSTRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQMLLDHLIILARGQLMFQGSPKDVGLHLGRMGRKVPKGENPIEHLIDVIQDYDQCEVGVGALAEFACTGLKPPPLSDQELSLSSVAPSIPARNPRHVDRSAVDDFDHSVRSPYTPRSWSASTSGVFRKFTPSRLKNEQRAQNPISNASPGSYTYSSEILAATPTPHSSDYTVNENDYLTPPDGIPKHLGPKFANSFLQETWILMRRNFINIRRTPELFLSRLMVLTVMGFMMATMFKSPKADLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRTSSYTIAGLVTHTPFLLLQATVYALIVWFALKLRGLFIYFVVVLFVSLLTTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSKDIPIYWRWMNKISTMTYPYEGLLMNQYQTKEVFGANVDGSFIRGLDILNGLHISTDSFKKWENVFIMLIWAVIYRILFYLILRFASKNQRS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1428 709 Pfam ABC-2 type transporter 234 291 IPR043926 GO:0140359
Dere09g1428 709 Gene3D - 35 269 IPR027417 -
Dere09g1428 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 277 IPR003439 GO:0005524
Dere09g1428 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 264 IPR027417 -
Dere09g1428 709 Pfam ABC-2 type transporter 439 645 IPR013525 GO:0016020|GO:0140359
Dere09g1428 709 SMART AAA_5 63 263 IPR003593 GO:0016887
Dere09g1428 709 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 697 - -
Dere09g1428 709 FunFam ABC transporter G family member 6 37 275 - -
Dere09g1428 709 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Dere09g1428 709 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1428 Dere-ChrDere09 18327135 18329962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1428 10 282 Calmodulin-binding Proteins AT2G36910 26.715 2.21e-10 62.4