Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1425 ATGGAGCTTACTCAACTTGGTTTTCTGGAGGAATTACTAGCTCCAAGAAGAGACACTTGGAACACTTTGTCCTCCGGGTTGAGCGAGATATTCCCTAATAATGGTTGGAGCTTTGATTCTTTTGAAGAGAACCCGCCTTTAGCTCCTTTAAATCCCCCATATCCTTCATTTTCCACACCATTAGACCATAGATTTGAATGCTCCTACACTAATGAAGCAGCAGCATACCCATTTGTTGATGGGTTCACATTACCGGAGCTTGACTCGTCATACACCAAGAATGAAGATTCAACACCATTTCCAGCACAAGAAAGTAACCCATCAATGGAAGATGAAGAGTTTGGCTTCCTGGGCAGTGAAAATCAGAGCCTTGAAGAAAGAAACACTGCCTGCAAAATTGAGGAACAAGCCACAGAAGTTCCAGTCTTCAATATGGGTTTGTGTGGGGAGAAAAAACCAAAGTCCAAGAAGCTGGAAGGGCAGCCCTCCAAGAATCTCATGGCAGAAAGAAGGCGAAGAAAGCGCCTCAACGACCGCCTCTCCATGCTTAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTATATGAAAGAGCTTCTAGAAAGGATCGGTAAGTTGCAAGAAGAAAGAATAGAAGAGGGTACAAATCAGATAAACCTCTTGGAAAATTCCAAGGAGCTAAAGCCAAACGAAGTGATGGTAAGAAATTCCCCCAAGTTTGAAGTTGAGAGGAGAGACCAGAACACAAAAATCAGTATCTGCTGTGCCACAAGGGCTGGATTGTTACTGTCAACGGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCCGAGCAGAGGACTAGTATTAGCTCCGAGGAGATAAAGCAAGCACTATTCAGAAATGCCGGTTATGGTGGGAGATGTCTATAG 1002 0.4381 MELTQLGFLEELLAPRRDTWNTLSSGLSEIFPNNGWSFDSFEENPPLAPLNPPYPSFSTPLDHRFECSYTNEAAAYPFVDGFTLPELDSSYTKNEDSTPFPAQESNPSMEDEEFGFLGSENQSLEERNTACKIEEQATEVPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEERIEEGTNQINLLENSKELKPNEVMVRNSPKFEVERRDQNTKISICCATRAGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRTSISSEEIKQALFRNAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1425 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Dere09g1425 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 77 327 - -
Dere09g1425 333 MobiDBLite consensus disorder prediction 91 105 - -
Dere09g1425 333 Gene3D - 152 226 IPR036638 GO:0046983
Dere09g1425 333 SMART finulus 166 215 IPR011598 GO:0046983
Dere09g1425 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 221 IPR036638 GO:0046983
Dere09g1425 333 MobiDBLite consensus disorder prediction 91 113 - -
Dere09g1425 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1425 Dere-ChrDere09 18281297 18282605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1425 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.492 7.27e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1425 HLH 7e-10 No_clan