Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1420 ATGTCTCCACCACTGCTGGTTGCTGAGGAGGAAGGGCAGAGCAATATCTCAACCGTACAATCTTCACCATCCTTGGACTCTGTCTCCCATAATGGTACTGCATTGAAAGAGCGCAATTACCTGGGATTGTCAGATTGCTCATCATCAGTTGACAGTTCTAGTGTCCCTAGCATGTCGGATGAGAAAAAAGGCAACCTTAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGGTTTGAGCTCAACAAAACTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATCATCCCTGAAAACTGTGGTTTCAGGCAACAAGAGAGGTTTTTCTGACACCATGGATGGGTTCCCTGAGGGGAACTTTCCTGGTAACTCAGGTATAAATGTTATGCTACCTAGACCTTCTGGAGCTCAGTCAACTTTTGTCAAAGAAATGCCAGCCAAGGTTTTACAGGAACGACCTTGTGCAGCTAATGGAAATGGTCATAACCATAAAGGTGCTTCTGTCAATGGCAGTGCACCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCACCCATTAGATCATATAGGAAGAACTCGTTGGCCACCACTTCGAAGAACAATGACGAAGTTGATGGAAAACCGGGTCCTGCTGCTCTCTTTGTGAAGGTGAGTATGGATGGTGCTCCCTATCTAAGGAAGGTAGATCTGAGAAGTTATAAAACATATCAAGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGAATCTCATGGAGCTCCAGGCAGAGAGATGTTAAGTGAGAGCAAGTTGAGGGACCTTCTACACGGTTCTGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTAACACGTGCAAGAGGCTGAAGATTATGAAGGGTTCGGATGCCATTGGCTTGGCTCCCAGGGCCATGGAGAAAACCAAGAACAGGAGCTAG 1056 0.4583 MSPPLLVAEEEGQSNISTVQSSPSLDSVSHNGTALKERNYLGLSDCSSSVDSSSVPSMSDEKKGNLNLKATELRLGLPGSQSPERDSDLYGLSSTKLDEKPLFPLLPTKDGICSSSLKTVVSGNKRGFSDTMDGFPEGNFPGNSGINVMLPRPSGAQSTFVKEMPAKVLQERPCAANGNGHNHKGASVNGSAPAAKAQVVGWPPIRSYRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYKTYQELSSALEKMFSCFTLGQCESHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFINTCKRLKIMKGSDAIGLAPRAMEKTKNRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1420 351 Pfam AUX/IAA family 71 342 IPR033389 -
Dere09g1420 351 Gene3D - 228 344 - -
Dere09g1420 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Dere09g1420 351 FunFam Auxin-responsive protein 226 343 - -
Dere09g1420 351 MobiDBLite consensus disorder prediction 42 61 - -
Dere09g1420 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Dere09g1420 351 MobiDBLite consensus disorder prediction 1 67 - -
Dere09g1420 351 MobiDBLite consensus disorder prediction 11 34 - -
Dere09g1420 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1420 Dere-ChrDere09 18213282 18216316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1420 235 341 B3 DNA Binding Superfamily AT4G23980 31.776 4.60e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere09g1420 AUX_IAA 3.9e-90 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1420 09 18213282 18216316 Dere09g1420 09 18213282 18216316 ECH