Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1401 ATGACAGAGTATAGGTTGCCACCGACGATGAATCTCTGGTCCGACGACAATTCCTCTGTTATGGAGGCTTTCATGAGCTCCGATCTATCCGTACTCTGGCCTCCTCCCCCTCAGCCCCAGTCCTCTGCTTCCACCACCACTCCTGGACCCGACCCCACCAAGCCTCTATCTCAATCTCAGCCCTCCGTTGCTCTCTTCAATCAGGAGACCCTCCAGCAGCGCCTCCAGGCCCTAATTGAGGGTGCCAGTGAGAGCTGGACCTACGCTATCTTCTGGCAGTCCTCTTATGACTACTCTGGCGCCTCCGTGCTGGGCTGGGGCGATGGGTACTACAAAGGGGAGGAAGATAAAGGGAAAGGGAAGGCTAAAACGCTGTCGTCTGCGGCGGACCAGGAGCACCGTAAGAAGGTTCTGCGCGAGCTGAATTCCCTCATTTCTGGATCCACTGCCACCACCGACGACGCTGTGGACGAGGAAGTCACCGACACAGAGTGGTTCTTCCTCGTTTCGATGACTCAATCGTTTGTTAACGGCGCCGGGTTACCGGGTCAGGCGTTCTACAATTCCGCCCCTGTCTGGGTCACCGGCGGGGAGAGGTTGTCAGCTTCCACTTGCGAAAGAGCGAGGCAGGGGCAGGTGTTCGGGCTTCAGACATTGGTCTGCATACCGTCGGCGAATGGGGTCGTGGAGTTGGGGTCCACTGAACTGATTTTCCAGAACTCCGATCTGATGAACAAGGTGAGGGTGTTGTTCAATTTCAACAACCCGGAAACTGGTTCGTGGCCCATCACTACTACCACTGCCGATCAAGGTGAGAACGACCCTTCCTCGCTTTGGATTAACGATCCATCTACTGGAATTGAAGTCAGAGATTCGGCCAACACAATAGTTCCGGTTTCGGTTCCGAGCACTAATAATAGTCACAACATTCAGACAATCGCCAAGCCGATGCAGCTCGAAACCCCAGGTTCTAGTACTTTAACTGAAGCCCCTAGTGTCGTTCATATCCCGTATACTCATTACGGCCACCAGCAACGGCAACAGCCACAGCAATCGCAAAACCAGGGGAGTTTTTCGAGGGAATTGAACTTTTCGGAATATGGGTTCGATGGAAACGGCCTTAAGAACGGAACTTTACATTCCTTGAAGCCGGAATCGGGTGAGATTTTGAACTTCGGGGAGAGCAAGAGGAGCTCTTATGGTGGAAATGGGAATTTCTTTACAGGACAGAGTCAATTCGTGGCAGAGGACAACAAGAAGAGGAGGTCACCCACTTCCAGGGGTAGTAACGATGAAGGGATGCTTTCCTTCACTTCCGGTGTGGTTTTGCCGGCTTCTAATATGAAGTCCAGTGGCGGCGGCGATTCCGACCACTCAGATCTCGAAGCTTCTGTGGTGAAGGAAGCAGATAGTAGCAGAGTGGTAGAACCAGAAAAGCGACCTCGCAAAAGAGGGCGAAAGCCAGCAAATGGCAGGGAGGAGCCTCTAAATCACGTTGAGGCGGAGAGGCAGAGGAGAGAGAAGCTGAATCAGAGGTTCTATGCGCTTCGTGCCGTGGTTCCAAATGTGTCAAAAATGGACAAAGCATCCCTCCTGGGCGACGCCATATCTTACATCAACGAGCTCAAGTCGAAGCTCCAAAATCTAGAGCTAAACAAAGAGGATTTGCAGAAGCAATTGGATTCAGTCAAGAAGGAACTCGAGCTGGTTACTAATAAAGATTCGCGTGTACTTCCATCAGATAAAGAACACAATAACTCCAATAACCATGGAAGCAGCAAGCTAATTGATTTAGATATCGATGTAAAGATCATAGGTTGGGATGCAATGATTCGAATCCAATGTAGCAAGAAGAACCACCCAGCAGCGAGGTTGATGGCGGCTTTAAAAGAGCTAGACCTGGATGTGCACCACGCTAGTGTGTCGGTGGTAAATGATTTGATGATCCAACAGGCGACAGTGAAGATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCGGCTAGCTTTGTCGTCCAAGGTTGGTGATGTCCGATAG 2037 0.513 MTEYRLPPTMNLWSDDNSSVMEAFMSSDLSVLWPPPPQPQSSASTTTPGPDPTKPLSQSQPSVALFNQETLQQRLQALIEGASESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKTLSSAADQEHRKKVLRELNSLISGSTATTDDAVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFYNSAPVWVTGGERLSASTCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVRVLFNFNNPETGSWPITTTTADQGENDPSSLWINDPSTGIEVRDSANTIVPVSVPSTNNSHNIQTIAKPMQLETPGSSTLTEAPSVVHIPYTHYGHQQRQQPQQSQNQGSFSRELNFSEYGFDGNGLKNGTLHSLKPESGEILNFGESKRSSYGGNGNFFTGQSQFVAEDNKKRRSPTSRGSNDEGMLSFTSGVVLPASNMKSSGGGDSDHSDLEASVVKEADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNLELNKEDLQKQLDSVKKELELVTNKDSRVLPSDKEHNNSNNHGSSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSSKVGDVR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1401 678 PANTHER MYC 44 673 IPR045084 GO:0003700|GO:0006355
Dere09g1401 678 SMART finulus 499 548 IPR011598 GO:0046983
Dere09g1401 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 493 542 IPR011598 GO:0046983
Dere09g1401 678 MobiDBLite consensus disorder prediction 428 454 - -
Dere09g1401 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Dere09g1401 678 MobiDBLite consensus disorder prediction 44 59 - -
Dere09g1401 678 Gene3D - 485 573 IPR036638 GO:0046983
Dere09g1401 678 Pfam Helix-loop-helix DNA-binding domain 497 542 IPR011598 GO:0046983
Dere09g1401 678 FunFam Transcription factor bHLH13 486 560 - -
Dere09g1401 678 MobiDBLite consensus disorder prediction 393 414 - -
Dere09g1401 678 Coils Coil 532 573 - -
Dere09g1401 678 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 494 564 IPR036638 GO:0046983
Dere09g1401 678 CDD bHLH_AtAIB_like 490 566 - -
Dere09g1401 678 MobiDBLite consensus disorder prediction 29 59 - -
Dere09g1401 678 MobiDBLite consensus disorder prediction 393 503 - -
Dere09g1401 678 MobiDBLite consensus disorder prediction 460 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1401 Dere-ChrDere09 18049026 18051062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1401 1 675 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.370 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1401 bHLH-MYC_N 2.7e-56 CL0161