Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1400 ATGGCCTTCGACAGCTTCGTTGACAAGAATGTTGTATTCAGAAAACTCAAGGCAAAGTCCGAGAATAAGATGTGTTTCGATTGTAACGCAAAGAATCCAACTTGGGCGTCGGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGTGTGCACGTCAGCTTTGTGAGATCTACGAATTTAGACTCATGGACTCCTGAGCAGCTGAGAATAATGAGCTTTGGAGGAAACAATCGTGCACATGTTTTCTTTAAGCAGCATGGTTGGACTGATGGTGGAAAAATTGAGGCCAAGTATACATCCAGAGCTGCAGAGTTGTATAGACAAATTCTTTCTAAGGAAGTAGCTAAAAATATGGCAGAGGAGGCAGGTTTACCATCGTCACCTGTTGCTTCTCAGTCTGCACAAGTGGCTAATGGACTTCCTGAAGTTAGGACTAGTGAACTTCACAAAGAAAACAATTTGGACAAGTCAGAAATGCCTGAGAACACTGCTTCCCCTAAAGCTTCTCATACAACAGTTTCCAGTACTGTGAAGAAGCCTATTGGTGCCAAAAAGACTGGCAAGATTGGGGGTCTTGGTGCTCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTATATGAGCAGAAGCCAGAAGAAGCACCGGCTCCAGCTTCTTCCTCAACAAGTCATGCTTCGGCATTTGAGCCACCCTTGACATCTCGATTTGAGTATGTAGAAATTGTTGAGTCATCTGAGTTGAATTCTGGAGGTGCACATATCCGTAGTCATGTGTCTCCTCCGAAGTCATCAAGTTTCTTTGCAGATTTTGGGATGGATAGAGGCTTCCCAAAGAGACCTGGGTCAAATTCCTCGAAAGTGCAAATTCAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCTTCAGCCCAATTTTATGGAGATCAGAACAAAGTTGCAGATGTGGATAGTCAAGTTGCTTTGTCTAAGTTCTCGGGCTCAACTGCCATTTCCAGTGCAGATCTTTTTGGTCACTCAGTAGATTCCTCCATTGATCTTACTGCAAATGACCTCCTCAATCGACTTTCTTTTCAGGCACAACAGGATATCTCTTCTATCAAGAACATTGCAGGAGAGACTGGGAAGAAGTTGAGTTCCTTTGCATCCTCTTTGATGACAGATATTCAGGAGAGAATCCTTTAA 1215 0.4346 MAFDSFVDKNVVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRIMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKNMAEEAGLPSSPVASQSAQVANGLPEVRTSELHKENNLDKSEMPENTASPKASHTTVSSTVKKPIGAKKTGKIGGLGARKLTKKPSESLYEQKPEEAPAPASSSTSHASAFEPPLTSRFEYVEIVESSELNSGGAHIRSHVSPPKSSSFFADFGMDRGFPKRPGSNSSKVQIQESDEARKKFSNAKSISSAQFYGDQNKVADVDSQVALSKFSGSTAISSADLFGHSVDSSIDLTANDLLNRLSFQAQQDISSIKNIAGETGKKLSSFASSLMTDIQERIL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1400 404 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Dere09g1400 404 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Dere09g1400 404 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Dere09g1400 404 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Dere09g1400 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Dere09g1400 404 MobiDBLite consensus disorder prediction 133 147 - -
Dere09g1400 404 MobiDBLite consensus disorder prediction 165 186 - -
Dere09g1400 404 MobiDBLite consensus disorder prediction 221 235 - -
Dere09g1400 404 CDD ArfGap_ArfGap2_3_like 8 123 - -
Dere09g1400 404 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Dere09g1400 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Dere09g1400 404 MobiDBLite consensus disorder prediction 131 235 - -
Dere09g1400 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 404 - -
Dere09g1400 404 Gene3D Arf GTPase activating protein 5 137 IPR038508 -
Dere09g1400 404 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1400 Dere-ChrDere09 18011288 18016992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1400 13 91 C2H2 Transcription Factor Family AT3G07940 45.000 7.98e-19 84.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1400 09 18011288 18016992 Dere09g1400 09 18011288 18016992 ECH