Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1389 ATGGCGTCTTTAGAATCTGCTCTCACAGTCTTGGCATCTTTCCGTTGTTCTAATGTGTATTGTTCATCTGCCAAACCACTTGATTCCTTAAAGCTCAATGTCTCCGGTTCTCTCTTTCCTCTTTCCCACAGTTCCGTCTTCTCTCCCGCGCTCACTTCCGTCAAGTCCAGCCCAAGGCTTTGCTTCCAATTATGCTCTGCACTGCAAGAGGCAGCAACAGAAGAAAAAACAGAGCTAACTCAGGAAACCGACATCAAGAAGAAGCTTTACGTCTTTAATCTTCCATGGTCACTCTCGGTCGTCGACATCAAGAGCCTCTTTGGTCAGTGCGGAACTGTAACTGACGTCGAGATAATTAAAAGCAAAAATGGGAGGAGCAGGGGTTTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTATTGACAAATTTGACTCTCATGAATTGTCAGGCAGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGTCCTCCAAGTCCCCCTGCTGACGAGACGCAGCATAAAATTTATGCTTCCAATCTTGCATGGAAAGCAAGATCAAGCCATCTCAGAGAATTCTTCACAGAGAATTTTAAATCACCAGTTTCAGCTAGGGTTGTCTTTGACAGCCCTGCTGGAAGATCTGCTGGGTATGGATTTGTTTCTTATGCTACAAAGGATGAAGCAGAGGCTGCCATTTCTACTTTGGATGGGAAGGAATTAATGGGACGACCACTTCGCCTAAAATTTAGTCAAAGGACCGTTAAAGAATCTGGAAATGAGAAAGAGGAAGAGCATGATTCTGATGATCAAGTGGAAGAATCGTAG 855 0.4526 MASLESALTVLASFRCSNVYCSSAKPLDSLKLNVSGSLFPLSHSSVFSPALTSVKSSPRLCFQLCSALQEAATEEKTELTQETDIKKKLYVFNLPWSLSVVDIKSLFGQCGTVTDVEIIKSKNGRSRGFAFVTMASGEEAQAAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPSPPADETQHKIYASNLAWKARSSHLREFFTENFKSPVSARVVFDSPAGRSAGYGFVSYATKDEAEAAISTLDGKELMGRPLRLKFSQRTVKESGNEKEEEHDSDDQVEES 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1389 284 PANTHER OS02G0815200 PROTEIN 66 260 - -
Dere09g1389 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Dere09g1389 284 Gene3D - 168 277 IPR012677 -
Dere09g1389 284 Gene3D - 65 167 IPR012677 -
Dere09g1389 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Dere09g1389 284 SUPERFAMILY RNA-binding domain, RBD 168 262 IPR035979 GO:0003676
Dere09g1389 284 MobiDBLite consensus disorder prediction 259 274 - -
Dere09g1389 284 MobiDBLite consensus disorder prediction 259 284 - -
Dere09g1389 284 SMART rrm1_1 184 258 IPR000504 GO:0003723
Dere09g1389 284 SMART rrm1_1 88 160 IPR000504 GO:0003723
Dere09g1389 284 SUPERFAMILY RNA-binding domain, RBD 76 170 IPR035979 GO:0003676
Dere09g1389 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Dere09g1389 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1389 Dere-ChrDere09 17956058 17959041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1389 185 268 Eukaryotic Initiation Factors Gene Family AT4G34110 32.558 1.32e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1389 09 17956058 17959041 Dere09g1389 09 17956058 17959041 ECH