Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1388 ATGGCTGCTCTTGGCAACCCAAGATCTTGGGTTCCATACATGAACAACAAAGATTGCTCCCAAGGCTTTTGTAGTGTGTTTTGCCCACAGTGGTGTTATATAGTGTACCCTCCTCCTCCTCCTACCTTCGAATTTCCTCAAGATGACGATTCAACCCCAAATTTCTCCCCTCTCGTTATTGCCATAATTGGGATCTTGGCCAGTGCTTTTCTTCTGGTAAGTTACTACACTTTCATATCCAAGTATTGTGGGAACAGAGAGTCTTCACGCAGAGAGATTCGTAACCCAAATGATGAAATTGAAGATGTTCACAACCCTTCACTTCATGAGCCCTGGCATGTCTCGACCAATGGATTAGATGAAGCTCTGATAAAGTCCATTACAGTGTGTAAGTACACGAAAGGAGACGGGTTGGTTGGAGTCACAGATTGCTCTGTTTGTCTCAATGAGTTTCAAGAAGATGAAAATGTTCGACTGTTGCCTAAATGCAGCCACGCTTTTCACCTTCCCTGTATTGACCAATGGCTCAAATCTCACTCTAATTGCCCTCTCTGTCGTGCTCATATTTTCACCTTCAATGCCCCAACCCTTCAAGCGCCTCCACCTGTGATGGAAGAATCTTCTACAGGGAATGAATCTTCTCCGGAAATTCAGAATGTGAGTGAAGAAAATGTAGGCGTTGGAAGAAGAAACGATGAGATGGGTGGGGGCGTGGAAGAAGGTCCAAAGCCTGCATTGCGTGCTTTTAGCGATCTGGGTTTTCTGCAGGGCAGGCATAGAATGATTGAGATCAGAGATGAAGGGGATGAAGAGGATGAAGCCATCAGAAGGTCAGTGTCCATGGATCATTCGTTTCAAATTGCTCAAGTAGGAGAAAGCTCTAATGAAGCAGGTCCATCAAAGAGATCGCAACGAGAAAGTAGCAAGTCTAGCTACAGAAAAAGGGTGTTGCACTGTGTGTTGAGTCCAATCGCCATGAAGAGATCGTTTTCCAGTGGAAGATTCTCGTTTTGCCGAAGTGGCAGAGGAAGGCAGGGGACTATCCCTGTTTGA 1053 0.4549 MAALGNPRSWVPYMNNKDCSQGFCSVFCPQWCYIVYPPPPPTFEFPQDDDSTPNFSPLVIAIIGILASAFLLVSYYTFISKYCGNRESSRREIRNPNDEIEDVHNPSLHEPWHVSTNGLDEALIKSITVCKYTKGDGLVGVTDCSVCLNEFQEDENVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRAHIFTFNAPTLQAPPPVMEESSTGNESSPEIQNVSEENVGVGRRNDEMGGGVEEGPKPALRAFSDLGFLQGRHRMIEIRDEGDEEDEAIRRSVSMDHSFQIAQVGESSNEAGPSKRSQRESSKSSYRKRVLHCVLSPIAMKRSFSSGRFSFCRSGRGRQGTIPV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1388 350 PANTHER RING-H2 FINGER PROTEIN ATL16 43 316 IPR044600 GO:0016567|GO:0016740
Dere09g1388 350 SMART ring_2 144 185 IPR001841 -
Dere09g1388 350 SUPERFAMILY RING/U-box 143 192 - -
Dere09g1388 350 MobiDBLite consensus disorder prediction 202 221 - -
Dere09g1388 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 192 IPR013083 -
Dere09g1388 350 Pfam Ring finger domain 143 186 IPR001841 -
Dere09g1388 350 CDD RING-H2_EL5-like 143 186 - -
Dere09g1388 350 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Dere09g1388 350 MobiDBLite consensus disorder prediction 201 221 - -
Dere09g1388 350 FunFam RING-H2 finger protein ATL54 119 192 - -
Dere09g1388 350 MobiDBLite consensus disorder prediction 290 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1388 Dere-ChrDere09 17926744 17927796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1388 6 350 C3H Transcription Factor Family AT5G17600 39.572 1.36e-68 217