Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1387 ATGGTTCTGCTTGAAACTCTTTCATCTAATGAGCTTTTCAACTTCATTATCTATGACACTATCTCTGCAACCCCATTTAACAACCACGACTCCTCCTCAGAAGCTAATTTCTTATTAGAAAACAGAGTGAAACCTCAGGAACATGACCCTACATCACTCAATAATCACTCTTCTTCAAGGAAACGCCATCCTGATGAACCTCAGGTGCCCATTGTGCAAGGGAGAAAGAAGAGGAGAAGGAAGCCAAGGGCTTGCAAGAACAAAGAAGAAGCTGAGACACAGAGAATGACCCACATTGCAGTTGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTAGCCGTCCTGCGTTCACTCATGCCTGAATCCTACGTCCACAGGGGTGACCAGGCCTCTATAGTAGGTGGTGCTATCGAGTTTGTGAAGGAGCTTGAGCATCTCTTGCAGTCACTTGAAGCTAAGAAGTTGCAGCTCCTGCAACAGGAAGTAGCACAATCTAATGAAGACTCTTCCATTTTCAAACTCATGAGACCCCCTTTTGCACAATTCTTTGTGTATCCTCAGTACACATGGTCTCAGGCTCCTAACAAATTCACATCCAAGACCAAGGCTGCCATAGCTGATATTGAGGTTACTTTGATAGAGACACATGCAAACCTTAGAATTCTCTCACGGAGAAGCCCCAGGCAGTTGTCAAAGTTGGTTGCTGGTTTTCAATCACTCTACCTCACCATCCTTCATCTTAATGTCACCACCATGGACCCTTTGGTGCTTTATTCTATCAGTGCCAAGGTTGAAGAGGGATGCCAACTTGGTTCTGCAGAGGACATAGCAGGGGCAGTTCATCACTTGCTCAGAAGAATTGAGGAGGAAGTTTCCCTTTGCTGTTGA 891 0.4534 MVLLETLSSNELFNFIIYDTISATPFNNHDSSSEANFLLENRVKPQEHDPTSLNNHSSSRKRHPDEPQVPIVQGRKKRRRKPRACKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVHRGDQASIVGGAIEFVKELEHLLQSLEAKKLQLLQQEVAQSNEDSSIFKLMRPPFAQFFVYPQYTWSQAPNKFTSKTKAAIADIEVTLIETHANLRILSRRSPRQLSKLVAGFQSLYLTILHLNVTTMDPLVLYSISAKVEEGCQLGSAEDIAGAVHHLLRRIEEEVSLCC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1387 296 Coils Coil 141 161 - -
Dere09g1387 296 Gene3D - 85 162 IPR036638 GO:0046983
Dere09g1387 296 Pfam Helix-loop-helix DNA-binding domain 94 145 IPR011598 GO:0046983
Dere09g1387 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983
Dere09g1387 296 MobiDBLite consensus disorder prediction 45 95 - -
Dere09g1387 296 PANTHER MAX DIMERIZATION, MAD 44 292 - -
Dere09g1387 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 161 IPR036638 GO:0046983
Dere09g1387 296 CDD bHLH_AtFAMA_like 96 155 - -
Dere09g1387 296 SMART finulus 99 150 IPR011598 GO:0046983
Dere09g1387 296 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1387 Dere-ChrDere09 17919631 17921186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1387 84 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.923 7.65e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1387 HLH 4.7e-10 No_clan