Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1385 ATGGATTATGGTCGAGATGGAAACGTCGTTCAAATAATCGCCTGTGGTGGAAATGAAAACTGGCCTGGTGACCAGGCCGTTTGGGCAACGGAAGATGATTACCGATTCTGGAACAACGGCGACGCCGACACTCCCACGAACTCGAATTACGATCAAAGGCAGTCCCAATCACGATCTGGAAGCGAACCCCCAAACAAGAAATCTAGGAATTCTCAGGATGTGACTTCGTCGAATCGGTCGAAGGCAATAGGTAAAATGTTCTTCAAGACTAAACTGTGCTGCAAATTCCGGGCCGGTACGTGTCCGTACATCACAAACTGCAATTTCGCTCACAGTATCGAAGAGCTTCGTCGGCCACCCCCAAATTGGCAAGAAATCGTGGCTGCTCACGAGGAGGAAAAATCCATTATGTCGGAACCGAGGGAGGAGTTTCAAATTCCGTCCGTTGGGTCGTCGGGGTTTGCAGGGGAGATGCAGAGAGCGTATAAAGGTCGCCATTGCAAGAAGTTCTACACGGAAGAAGGGTGCCCATATGGAGATAATTGTACATTTCTTCATGATGAGCAATCTAGGAATCGTGAGAGTGTGGCTATAAGTTTAGGCCCTGGTGGGTATGGTGGTGGTGCTGGGAGCGGATCCAATTCCAAGCCATCAAATTGGAAGACAAGGATTTGCAATAAGTGGGAAATGACCGGATATTGCCCATTTGGAAATAAATGCCATTTTGCTCATGGTGCTGCAGAATTGCACCGATATGGAGGGGGCCCTATGGAGACAGACAATAGAGACACTACTTCTGCTGCTGCTCCCGACACAAAGCAGGGCAGCGTACCTTTAAAAACTCCTGCTGAAAATGTGGTTGCATCAGTCACTCCAGTGGCTCATTCTGATGTCTACCATATTGGGGTTCCTTCACAAAGGTCTTCAATTGTGATTCAGAGGCAAGGGCAGAAAGCTCATCAGAAGTGGAAGGGTCCGGATAAAATCAGTAGGATCTATGGTGATTGGATTGATGACTTGGAATAA 1026 0.4795 MDYGRDGNVVQIIACGGNENWPGDQAVWATEDDYRFWNNGDADTPTNSNYDQRQSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKSIMSEPREEFQIPSVGSSGFAGEMQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGGAGSGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGPMETDNRDTTSAAAPDTKQGSVPLKTPAENVVASVTPVAHSDVYHIGVPSQRSSIVIQRQGQKAHQKWKGPDKISRIYGDWIDDLE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1385 341 SUPERFAMILY CCCH zinc finger 217 250 IPR036855 GO:0046872
Dere09g1385 341 Gene3D - 82 118 - -
Dere09g1385 341 Gene3D - 212 251 - -
Dere09g1385 341 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Dere09g1385 341 MobiDBLite consensus disorder prediction 40 78 - -
Dere09g1385 341 MobiDBLite consensus disorder prediction 37 78 - -
Dere09g1385 341 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Dere09g1385 341 FunFam Zinc finger, CCCH-type 155 193 - -
Dere09g1385 341 Gene3D - 155 201 - -
Dere09g1385 341 PANTHER CCCH ZINC FINGER/TIS11-RELATED 212 265 IPR045877 GO:0003729
Dere09g1385 341 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Dere09g1385 341 MobiDBLite consensus disorder prediction 198 218 - -
Dere09g1385 341 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Dere09g1385 341 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Dere09g1385 341 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Dere09g1385 341 MobiDBLite consensus disorder prediction 254 279 - -
Dere09g1385 341 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Dere09g1385 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Dere09g1385 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Dere09g1385 341 FunFam zinc finger CCCH domain-containing protein 15-like 213 252 - -
Dere09g1385 341 SUPERFAMILY CCCH zinc finger 161 189 IPR036855 GO:0046872
Dere09g1385 341 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Dere09g1385 341 Pfam CCCH-type zinc finger 165 187 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1385 Dere-ChrDere09 17905907 17909156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1385 221 249 C3H Transcription Factor Family AT1G68200 62.069 2.98e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere09g1385 zf-CCCH 1.1e-10 CL0537