Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1381 ATGGCTGAAATATTTTTTCCTTCAAATTTGCTTCGCCCCCTTCTTCGTCCTTACCCGATCCTAGGGTTTCTTGGAAGACGGCTTCACAGGTTTCTGTCAAATATGGGGAAAAAGAAACCCAGGGAGCCACAGGAAACCCCTAAACCCAGCGCTACTTCGCCTTCTTCCGACATCTTCAGCAAGCTGTTTGGTAACGTGTCGGAACACAGCGTCAATTGTTCTCTATTCTCAGACAATAACCCCTTTCGGAGGAAACCTCTGGAATCTGGTTCAGTTTTGGACTCAACCAAAAATACTGAAAGCGCTGGTAACGCGGTCTCCGATAACCATGATTCTGGGGAGTTGAAGAAGAGGAAGAGGAGCAAAGAGAAGAAGTCGTCTATTGATTCAGATAATGCCCTTGAAGTGTCGCGGAAGAAGTCGAAATCGAGTTCCGACGTGAATCCACCTTCGGATCCCCAACCGAATAGAATAGCGCCGGATGATGAGACCAAAGACTCTGGTTCGGGTGCGGAGGCGACTGCATTACCGGAGAAAGAAAATTTTGTGAATGAGGATAGGGAGATGAGGAAGAAAAAGAGAAAAAGGGATGAAGTTGAGAAAGAGTGGGAATCAAAGAAGTATGGGGCGGTGGAGGAAGAGCAAGATGATGGAAAACGCTTAGGAAATAAAATTGTGGGGACCAAAAGGAAGACAGTGGATAATCCAGCCGAAATGTTGGTAACAAATGAAGGTTTTGATGATGAGAATAAGCTCTTAAGAACCATATTTGTTGGGAATTTGCCGCTCAATGTGAAAAAGAAGACTTTATTGAAGGAGTTCAAGAAATTTGGGGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTAGATACCAAGAAACCTAGAAAGGGAGCCATCCTTTCAAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCTTATGTTGTTTTTGAGACAGAGCAGTCTGCTCAGGCGGCTTTGTCCCATAATATGGCTGTGGTAGGAGGAAATCACATTCGTGTTGATAGAGCATGCCCACCTCGCAAGAAACTTAAAGGAGAGAATGCTCCACTCTATGATAACAAGAGAACTGTTTTCGTTGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTATATAAACTATTTTCTGGTATAGCCAACCTGGAATCCAGCATAGAAGCTGTTAGAGTCATTAGAGATCCTCACTTGAATCTTGGGAAGGGTATCGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTTGTTAAGAAGCGGAGCTTGAAGCTTCGAGACCGAGAGCTGAGATTCTCACATGCCCGAATGGATGCCACCCCATGCAAAAGGCCAAACTCGTCACCACCACAATCTTACAGTACCTCTGCAAAGAAGTCAGCCATGGCTTCAAGGTCTCCTTCAAGCAGTAATAACACGAATAATAGAAAATCTAATATGTCTTACCAGGGTTTGCGAGCAACCAAAACTGTTGTCCATAAGAAATCGAGAATCCATGGAGGAGAGCAACCAACAGAACGCAAGACGAAAAGACCAACAGTTGCTGCCAGAAAGGCTAAACTAAAATCAAAATTGCTCAAGGATGATGGTCCATCAAAACAAGCAGGAATAAAACGCAAGCTTGATATTCAAACTCCAGATAGCTCCCGGCGAAACAAGAAAGTTAAGAAGAATAGGTAG 1707 0.437 MAEIFFPSNLLRPLLRPYPILGFLGRRLHRFLSNMGKKKPREPQETPKPSATSPSSDIFSKLFGNVSEHSVNCSLFSDNNPFRRKPLESGSVLDSTKNTESAGNAVSDNHDSGELKKRKRSKEKKSSIDSDNALEVSRKKSKSSSDVNPPSDPQPNRIAPDDETKDSGSGAEATALPEKENFVNEDREMRKKKRKRDEVEKEWESKKYGAVEEEQDDGKRLGNKIVGTKRKTVDNPAEMLVTNEGFDDENKLLRTIFVGNLPLNVKKKTLLKEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDAADSVHAYVVFETEQSAQAALSHNMAVVGGNHIRVDRACPPRKKLKGENAPLYDNKRTVFVGNLPFDVKDEELYKLFSGIANLESSIEAVRVIRDPHLNLGKGIAYVLFKTREAANFVVKKRSLKLRDRELRFSHARMDATPCKRPNSSPPQSYSTSAKKSAMASRSPSSSNNTNNRKSNMSYQGLRATKTVVHKKSRIHGGEQPTERKTKRPTVAARKAKLKSKLLKDDGPSKQAGIKRKLDIQTPDSSRRNKKVKKNR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1381 568 MobiDBLite consensus disorder prediction 453 495 - -
Dere09g1381 568 Coils Coil 182 202 - -
Dere09g1381 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 348 IPR000504 GO:0003723
Dere09g1381 568 MobiDBLite consensus disorder prediction 530 545 - -
Dere09g1381 568 CDD RRM1_RBM34 254 344 - -
Dere09g1381 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 298 IPR000504 GO:0003723
Dere09g1381 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 439 IPR000504 GO:0003723
Dere09g1381 568 MobiDBLite consensus disorder prediction 75 205 - -
Dere09g1381 568 MobiDBLite consensus disorder prediction 504 521 - -
Dere09g1381 568 Gene3D - 162 356 IPR012677 -
Dere09g1381 568 SUPERFAMILY RNA-binding domain, RBD 364 453 IPR035979 GO:0003676
Dere09g1381 568 MobiDBLite consensus disorder prediction 91 108 - -
Dere09g1381 568 MobiDBLite consensus disorder prediction 445 568 - -
Dere09g1381 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 446 IPR000504 GO:0003723
Dere09g1381 568 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 345 490 - -
Dere09g1381 568 MobiDBLite consensus disorder prediction 110 142 - -
Dere09g1381 568 MobiDBLite consensus disorder prediction 35 58 - -
Dere09g1381 568 SMART rrm1_1 255 344 IPR000504 GO:0003723
Dere09g1381 568 SMART rrm1_1 366 442 IPR000504 GO:0003723
Dere09g1381 568 CDD RRM2_RBM34 366 440 IPR034221 -
Dere09g1381 568 Gene3D - 357 450 IPR012677 -
Dere09g1381 568 MobiDBLite consensus disorder prediction 179 205 - -
Dere09g1381 568 SUPERFAMILY RNA-binding domain, RBD 248 355 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1381 Dere-ChrDere09 17861126 17864993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1381 256 445 Eukaryotic Initiation Factors Gene Family AT1G22760 27.320 2.27e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1381 09 17861126 17864993 Dere09g1381 09 17861126 17864993 ECH