LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1376	ATGGGTAGGCCTCCATGTTGTGATGAGAGTAGTGGAGTAAAGAAAGGGCCATGGACACCAGAAGAAGATCAGAAGCTTATGGATTATATCAACAAGCATGGCCATGGAAGCTGGAGGACACTTCCAAAGCATGCTGGTCTCAATAGGTGTGGCAAGAGCTGTAGGCTAAGGTGGACTAATTATCTGAGGCCTGACATCAAGAGAGGCGAATTCTCTGAAGAGGAAGAGCGAATGATCATCAACCTTCATTCCGTTCTGGGAAACAAGTGGTCAAAGATTGCAGGCCATCTTCCTGGAAGAACAGACAATGAAATAAAGAACTTCTGGAACACTCATATAAGAAAGAAGCTGCTTCATATGGGTATTGACCCAGAAACTCACAAGCCCAGAACTGATTTCAATCACTTCTTGAATCTCACTCAATTGCTTGGCCTCTCATCAAACAACATGGGTCCATGGGGCAATAACAGTCCTCTTGCTTCACAACTAAATTTCACTACTCAGTTAACCAAAATCCAACTGTTGCAAAACCTATTACAACTTGTCAATTCAAATCCTTACCTCTTAGGCAATAATCACACCTTCAACCCACTTCAACTTCAATCCTTTGTGAATGGAACAAGCAAGGGTCAAGAATATACAAACCAAGGAGGTCTATTATTCCCTCAAGCACACAGTGAGTCTCATGAGGGTATTTCAAAGTCATGGGCTGATGTACAAGGAGGATGTGGTTTAGACGGTTTTGGTTTCAATAATGGTAGCAGCATTGATAATATTGCACATCAGACCCAGTCGGAAATGGCAATTCCTGCTTTAGTCTCGGCGCCTCCTGTCACCGGCGCCGCCGGCAACCAAACGGATGGTAGCGGCAGTACAGCTCAAGTGTCCACTGATCAGTCACCTAATTCATCCACCATCTTTGAGGCTTGGGAGAAACTCCTGGACGATGAAACAAGTGGCTCCGACTGGAAAGAGATTCTAGAATTATCATCGGCTTTGGCGTCGCCAATTTCGCGGTAG	1020	0.449	MGRPPCCDESSGVKKGPWTPEEDQKLMDYINKHGHGSWRTLPKHAGLNRCGKSCRLRWTNYLRPDIKRGEFSEEEERMIINLHSVLGNKWSKIAGHLPGRTDNEIKNFWNTHIRKKLLHMGIDPETHKPRTDFNHFLNLTQLLGLSSNNMGPWGNNSPLASQLNFTTQLTKIQLLQNLLQLVNSNPYLLGNNHTFNPLQLQSFVNGTSKGQEYTNQGGLLFPQAHSESHEGISKSWADVQGGCGLDGFGFNNGSSIDNIAHQTQSEMAIPALVSAPPVTGAAGNQTDGSGSTAQVSTDQSPNSSTIFEAWEKLLDDETSGSDWKEILELSSALASPISR	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1376	339	Pfam	Myb-like DNA-binding domain	15	62	IPR001005	-
	Dere09g1376	339	Pfam	Myb-like DNA-binding domain	68	112	IPR001005	-
	Dere09g1376	339	MobiDBLite	consensus disorder prediction	1	20	-	-
	Dere09g1376	339	FunFam	Transcription factor MYB39	70	131	-	-
	Dere09g1376	339	ProSiteProfiles	Myb-like domain profile.	10	62	IPR001005	-
	Dere09g1376	339	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Dere09g1376	339	Gene3D	-	14	67	-	-
	Dere09g1376	339	SUPERFAMILY	Homeodomain-like	12	109	IPR009057	-
	Dere09g1376	339	SMART	sant	14	64	IPR001005	-
	Dere09g1376	339	SMART	sant	67	115	IPR001005	-
	Dere09g1376	339	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Dere09g1376	339	MobiDBLite	consensus disorder prediction	276	302	-	-
	Dere09g1376	339	MobiDBLite	consensus disorder prediction	279	302	-	-
	Dere09g1376	339	Gene3D	-	70	117	-	-
	Dere09g1376	339	CDD	SANT	70	113	IPR001005	-
	Dere09g1376	339	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	62	IPR017930	-
	Dere09g1376	339	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	228	-	-
	Dere09g1376	339	FunFam	MYB-related transcription factor	14	67	-	-
	Dere09g1376	339	CDD	SANT	17	62	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1376	Dere-ChrDere09	17829815	17831703	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1376	1	337	MYB Transcription Factor Family	AT3G02940	45.481	4.08e-90	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere09g1376		Myb_DNA-binding	2.1e-17	CL0123