Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1375 ATGGCTTCAGTTATCGGAGTTCCTGCAACACTGCAGTCAAACTTCGATTCCACTTATAGTTTAACATGCACCTCTTCGTTATTAAATATCCCATCTTCTTTTGCACGTTATAATGACACATCCACATCCAACCCCGGTTTCTATCTCCTCCACGTAAGTTTCCTTCAAAACACTCCAAACCGAGCTCTCATTTTCTTCCCCAGATCATCATTCAAAATCACTTCTTGTGCTCTCTTTTCCATCAAAGCTTCTTCTTCCTCTTTCCATTTCCAGGCCACAAAAATGCCAGACCGGCGTACATTCTCCGGCGACTCTCCGGCCATGGATGCGAAGGAGACAAAGAAGGAGAGAAAAGTTCCTCTACTAAAGTTGTTCTCTTTTGCAGACTCCTATGATTATGTACTAATGGCAATTGGATCTGTTGGTGCATGTGTTCACGGAGCTTCTGTTCCAGTTTTCTTCATCTTCTTTGGAAAGTTGATAGATGTCATAGGCTTGGCTTATCTCTTTCCCCAAGAAGCTTCTCACAAAGTTGCCAAGTATTCGTTGGATTTTGTGTATCTGAGTATAGCAATCATGTTTTCATCTTGGACAGAGGTGGCATGTTGGATGCATACTGGGGAACGCCAAACAGCGAAGATGAGAATGGCATATTTAAGATCAATGCTGAATCAAGACATTAGTCTGTTCGACACCGAAGCTTCAACTGGGGAGGTCATTTCTGCCATTTCCAGCGAAATAATCGTTGTTCAAGATGCAATATCAGAGAAGGTAGGGAATTTCTTGCACTACATAAGCCGATTCGTAGCGGGATTCACTATTGGATTTGTGAGAGTATGGCAGATCAGTCTAGTAACACTTTCAATCGTTCCCTTGATTGCCCTCGCTGGTGGTCTTTATGCTTACGTCACAATCGGGCTTATTGCCAAAGTCCGAAAAGCCTACGTTAGGGCTGGTGAAATTGCTGAAGAGGTCATAGGGAATGTCAGAACGGTTCAAGCATTTGCAGGAGAAGAGAGATCGGTGAGATCATACAAAGCCGCTCTCGTAAATACTTACAAAAATGGCCGGAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTCCATGCATTGTGTCCTGTTTCTGTCATGGGCCCTGCTTGTATGGTTTACCAGTGTTGTTGTTCACAAGAAGATCGCCAATGGAGGCGATTCCTTCACTACCATGCTCAATGTTGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCTGCATTTATCAGAGCAAAGGCTGCAGCCTACCCCATTTTTGAGATGATAGAGAGGGAAACAGTGAGCAAAATCAGCTCAAAAACTGGTCACAAATTAAGAAAATTGGATGGTTGCATCCAATTTAAAGATGTCTGTTTCAGATATCCATCTCGTCCTGATATAGTTATCTTCAACAACCTCTTTCTTGACATTCCTCCTGCCAAAATTGTAGCCCTAGTGGGAGGAAGTGGCTCTGGAAAGAGTACTGTTATATCTTTGATTGAGCGCTTCTACGAGCCCCATTCTGGACAGATACTATTAGACGGGAATGATATCCGGGAGCTCGATATCAAATGGCTAAGAAGTCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTACCACAAGCATCAGAGAAAACATACTGTATGGAAAAGAAGATGCCACTCTTGAAGAACTTAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGACAGATTGGAAACTCAGGTGGGTGAGAGAGGGGTACAACTATCAGGTGGACAAAAGCAAAGGATTGCAATATCTCGAGCCATTGTGAAGAACCCTTCAATCCTTTTATTGGATGAAGCTACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAGGAAGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTCATAGTGGCACACAGGCTTTCTACAATTAGGAATGCAGATATGATTGCTGTTGTACAGGGAGGGAGAATTGTGGAAACTGGTAATCATGAGGAGCTCATTTCTAACCCAAATAGCGTATATGCATCTCTAGTTCAACTCCAGGAGACAGGTTCTTTGCAAAGCCACCAGACAGTAGGTCCTACCACTAGCTTGGCCAAGCTGCCAAGCATAAGGTACTCAAGAGAATTGTCCCGTACAACAAGCTCTGGCGGTAGTTTTCGGTCAGATAAAGAGTCTTTAGGCCATGTTTGTGCTGATGAAGTGGAAAGTGTTGCCAAGTCAAGTCATGTTACCATAAGAAGACTTTATTCAATGGTTGGGCCTGATTGGTTCTATGGGGTGTTTGGCACCTTTTGTGCATTTATTGCAGGGGCCCAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCCCTTGTATCATACTATATGGACTGGGAAACAACACGTCATGAGGTCAGAAAAATTGCTTTCCTGTTCTGTGGGGCAGCAGTTGTGACTGTTATTGTGCATGCCATTGAGCATCTGTCTTTTGGAATCATGGGCGAGCGACTTACTCTTCGTGTGCGAGAAGCAATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGAAACAAGCAATACAAGTTCAATGCTATCATCACGTTTAGAGACGGATGCAACTTTGTTACGAACTATAGTTGTTGATAGGTCTACAATTCTCTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGGATAACGCTGGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCATATCAGCGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACGGTATATCTGAAAGCCAACATGCTGGCTGGGGAAGCAGTGAGTAACATACGTACTGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTAGGACTTTATGCTAATGAGCTTGTTGAGCCTTCCAAGCTTTCATTCAAAAGGGGCCAAATTGCTGGCTTATTTTATGGCATTTCACAGTTCTTCATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTCGCTAGCTTCAAATCAGTCATGAAGTCATTTATGGTTCTAATTGTAACAGCATTGGCCATGGGGGAGACTTTGGCTCTGGCTCCAGATCTTTTGAAAGGGAACCAAATGGTTGCATCTGTTTTCAACGTGATGGATAGAAAGTCAGGAATAATGGGTGATGCCGGAGAAGAGTTAAAGACGGTGGAAGGAACTATTGAGCTAAAAAGCATCCATTTTAGCTACCCTTCAAGGCCAGATGTTGTGATTTTTAAAGATTTTAATCTGAGAGTGCCGGCAGGCAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGCAAAAGCTCTGTCATCTCCCTCATACTCAGATTTTATGATCCAACATCTGGGAGAGTGATGATTGATGGAAAAGACATTAGGAGACTCAATCTAAAATCTCTGAGGAAGCATATTGGTCTGGTGCAGCAAGAACCAGCCCTTTTTGCGACATCAATTTATGAAAACATCTTATATGGAAAGGAAGGAGCCTCTGATTCAGAGGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAGTTTCATCAGTTCTCTTCCAGATGGCTATAGCACCAAAGTGGGCGAACGAGGCGTTCAGTTATCCGGTGGCCAGAGACAAAGGGTAGCCATAGCCCGAGCTGTTTTAAAGAACCCAGAAATCTTGCTGCTAGATGAAGCCACTAGTGCGCTGGATGTGGAATCCGAGCATGTGGTGCAGCAAGCTCTGGACAGATTGATGCAGAACAGGACAACAGTTATGGTGGCACACAGGCTATCCACAATAAGAAATGCAGATCAAATCTCAGTTTTGCAGAACGGGAAGATAATAGAACAAGGAACTCATTCAACTCTTGTAGAGAACAGGAATGGAGCATATTTTAAATTAGTCAACCTTCAACAACAACAGCGGCAATAA 4023 0.4343 MASVIGVPATLQSNFDSTYSLTCTSSLLNIPSSFARYNDTSTSNPGFYLLHVSFLQNTPNRALIFFPRSSFKITSCALFSIKASSSSFHFQATKMPDRRTFSGDSPAMDAKETKKERKVPLLKLFSFADSYDYVLMAIGSVGACVHGASVPVFFIFFGKLIDVIGLAYLFPQEASHKVAKYSLDFVYLSIAIMFSSWTEVACWMHTGERQTAKMRMAYLRSMLNQDISLFDTEASTGEVISAISSEIIVVQDAISEKVGNFLHYISRFVAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERSVRSYKAALVNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKKIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERETVSKISSKTGHKLRKLDGCIQFKDVCFRYPSRPDIVIFNNLFLDIPPAKIVALVGGSGSGKSTVISLIERFYEPHSGQILLDGNDIRELDIKWLRSQIGLVNQEPALFTTSIRENILYGKEDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGRIVETGNHEELISNPNSVYASLVQLQETGSLQSHQTVGPTTSLAKLPSIRYSRELSRTTSSGGSFRSDKESLGHVCADEVESVAKSSHVTIRRLYSMVGPDWFYGVFGTFCAFIAGAQMPLFALGISHALVSYYMDWETTRHEVRKIAFLFCGAAVVTVIVHAIEHLSFGIMGERLTLRVREAMFSAILKNEIGWFDETSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSTVYLKANMLAGEAVSNIRTVAAFCSEEKVLGLYANELVEPSKLSFKRGQIAGLFYGISQFFIFSSYGLALWYGSVLMEKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFNVMDRKSGIMGDAGEELKTVEGTIELKSIHFSYPSRPDVVIFKDFNLRVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGRVMIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHSFISSLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESEHVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQNGKIIEQGTHSTLVENRNGAYFKLVNLQQQQRQ 1340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1375 1340 CDD ABC_MTABC3_MDL1_MDL2 1097 1335 - -
Dere09g1375 1340 CDD ABC_6TM_Pgp_ABCB1_D2_like 767 1082 - -
Dere09g1375 1340 CDD ABC_6TM_Pgp_ABCB1_D1_like 136 433 - -
Dere09g1375 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 696 IPR003439 GO:0005524
Dere09g1375 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1097 1333 IPR003439 GO:0005524
Dere09g1375 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 778 1064 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere09g1375 1340 FunFam ABC transporter B family member 4 1087 1340 - -
Dere09g1375 1340 SUPERFAMILY ABC transporter transmembrane region 116 430 IPR036640 GO:0005524|GO:0016020
Dere09g1375 1340 ProSitePatterns ABC transporters family signature. 1236 1250 IPR017871 GO:0005524|GO:0016887
Dere09g1375 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 425 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere09g1375 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1090 1335 IPR027417 -
Dere09g1375 1340 Pfam ABC transporter 479 627 IPR003439 GO:0005524
Dere09g1375 1340 Gene3D ABC transporter type 1, transmembrane domain 123 1066 IPR036640 GO:0005524|GO:0016020
Dere09g1375 1340 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Dere09g1375 1340 Pfam ABC transporter 1116 1264 IPR003439 GO:0005524
Dere09g1375 1340 CDD ABC_MTABC3_MDL1_MDL2 460 698 - -
Dere09g1375 1340 Gene3D - 1087 1340 IPR027417 -
Dere09g1375 1340 SUPERFAMILY ABC transporter transmembrane region 764 1078 IPR036640 GO:0005524|GO:0016020
Dere09g1375 1340 PANTHER ABC TRANSPORTER B FAMILY 110 702 IPR039421 -
Dere09g1375 1340 FunFam ABC transporter B family member 1 450 699 - -
Dere09g1375 1340 SMART AAA_5 487 679 IPR003593 GO:0016887
Dere09g1375 1340 SMART AAA_5 1124 1310 IPR003593 GO:0016887
Dere09g1375 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 698 IPR027417 -
Dere09g1375 1340 Gene3D - 450 699 IPR027417 -
Dere09g1375 1340 Pfam ABC transporter transmembrane region 138 408 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere09g1375 1340 Pfam ABC transporter transmembrane region 779 1050 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere09g1375 Dere-ChrDere09 17813951 17823562 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1375 106 1336 Calmodulin-binding Proteins AT2G36910 49.563 0.0 1208