Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1371 ATGTCAGCTGAAGCTCCCAGCAAGAACCACCAACCTCGAAATTCCCAACCGAGGCGGCGGAATGAAGGTGAAAAGGTCAAGTTTCGATTCGTCAAGAAATCTGAATTGCGTTCCTCTAATTCTGAGGTGGATCGTTCACTTGAAGAATTAAGCATTCGTGACGAAGTTGATGTCGCACGAGAAAGGGACCAAGGGAACAAGGGCGGTTCGGAGTTGAAGATTGAAGTAAGAAATGAGAGGGAGAAGGATCGTGTGGATGATTCAAGCAAGGAAGGGAATAGTATTCAAAATAAACTGGATAAGCTACTGAGGGATTTAAAAGAGCCGGAATTGTCCGAGGAGCAGCTGAGTGTAAATGATCAATTGCAAGGTGACGAGTTACTCGCATTGGAGTCAATTTATGGGGAAAATGTCTTCAACCTTGATAGATGGAAAGGTCTCCGTTGTTTTCAGATACACATACACATTGAAGTTTTGGATGCAATTGCCATCACAGCTAAGATGAATTCTTCTAATGAACATAAGACCACAAGCAGCAAATCAGATGACTTCTCATACTCTTTCAAAGTCCAATATCTTCCACCTATTATTTTGACATGTTTATTACCTAAGTCATACCCAAGCCATCAACCACCTGTTTTTTTAATTTTTGTTAAGTGGTTGGACTCCATAAAAATTTCCAGTCTGTGCTCCAAGTTGGATTCATTATGGGCTGAGCAGCAAGGGCAGGAAGTTATTTACCAGTGGGTAGAATGGCTACATGGTTCTTCCCTTTCTCATCTGGGAATTGATAAAGAAATTACGCTTGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGTGCTGTTTCAGGAGCTGTGTCCCTAGATTTTGATATTCCTTCAATACGAAGTTACAACAATGAGAGACATCACGAGAACTTCCTTAAGGAAATGCATGAATGTTGCATTTGCTTTAGTGTATATGCAGGTACAGAATTTGCCCAATTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTTACCCGCATGCATGTAAAAGAAGGCACCATCAGTAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGATTCCACCAGGCCTGTTAAAACGCTTGCTTGGTGATGAAGAATATGAACGCTGGGAATCCTTGATGTTGGAGAAAACACTTGGATCAATGTCTGATGTTGCTTATTGCCCAAGATGTAAAACACCTTGTATTGAAGATGAAGACCAGCATGCTCAATGCTCCAGATGCTTCTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCATAGCATGCATGACAATAGATATGAAGCTTCAAATTTTGCAAGAGCGCCAGAATTCATCTCAATTAAAGGAAGCTCAGAAGCTTAGGGAACGTGAAATGATTAATGAAATGCTCAGCGTCAAAGAAATTCAACGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGGACAGAAGGTTGCAATAAAATGGTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGTTGCAACAAAGCAATTGATGAATCTGATCCATATGGACATTTCAGGGATGGGTCCTGTGAACTGTTCCCACAAGAAATGGTAGAGGCTTGGCAAGAACGCATAAACCCTCGCCAGGTGGTAGGACAGTTACAAGCTGAACTCTTTTTTCAACGTGGCCAGCAATGTCCTAATTGTCGTCAATTTAATGCAAAGATCGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTACTCATGCAAGGAGATTGTTAGGCGTAGCACACAGCATTATGGACCCAAGGGTTGCAAACAGCACACCGAGGATTAG 1869 0.4195 MSAEAPSKNHQPRNSQPRRRNEGEKVKFRFVKKSELRSSNSEVDRSLEELSIRDEVDVARERDQGNKGGSELKIEVRNEREKDRVDDSSKEGNSIQNKLDKLLRDLKEPELSEEQLSVNDQLQGDELLALESIYGENVFNLDRWKGLRCFQIHIHIEVLDAIAITAKMNSSNEHKTTSSKSDDFSYSFKVQYLPPIILTCLLPKSYPSHQPPVFLIFVKWLDSIKISSLCSKLDSLWAEQQGQEVIYQWVEWLHGSSLSHLGIDKEITLGPYGMKHVGDERAVSGAVSLDFDIPSIRSYNNERHHENFLKEMHECCICFSVYAGTEFAQLPCQHFFCLKCLQTFTRMHVKEGTISNLQCPNSKCAVMIPPGLLKRLLGDEEYERWESLMLEKTLGSMSDVAYCPRCKTPCIEDEDQHAQCSRCFFSFCTLCRERRHVGIACMTIDMKLQILQERQNSSQLKEAQKLREREMINEMLSVKEIQRDSKLCPSCQMAISRTEGCNKMVCGNCGQYFCYRCNKAIDESDPYGHFRDGSCELFPQEMVEAWQERINPRQVVGQLQAELFFQRGQQCPNCRQFNAKIGNNNHMFCWACQSHYCYSCKEIVRRSTQHYGPKGCKQHTED 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1371 622 ProSiteProfiles Zinc finger RING-type profile. 315 363 IPR001841 -
Dere09g1371 622 MobiDBLite consensus disorder prediction 15 96 - -
Dere09g1371 622 Gene3D - 456 563 - -
Dere09g1371 622 CDD Rcat_RBR_RNF14 473 538 IPR047548 GO:0008270
Dere09g1371 622 FunFam RBR-type E3 ubiquitin transferase 310 394 - -
Dere09g1371 622 ProSitePatterns Zinc finger RING-type signature. 332 341 IPR017907 -
Dere09g1371 622 SUPERFAMILY RING/U-box 310 395 - -
Dere09g1371 622 SUPERFAMILY RING/U-box 563 620 - -
Dere09g1371 622 Pfam RWD domain 122 254 IPR006575 GO:0005515
Dere09g1371 622 SUPERFAMILY UBC-like 117 254 IPR016135 -
Dere09g1371 622 FunFam RBR-type E3 ubiquitin transferase 456 565 - -
Dere09g1371 622 CDD BRcat_RBR_RNF14 394 445 - -
Dere09g1371 622 CDD RING-HC_ITT1-like 309 368 - -
Dere09g1371 622 SMART ibrneu5 470 535 IPR002867 GO:0008270
Dere09g1371 622 SMART ibrneu5 383 441 IPR002867 GO:0008270
Dere09g1371 622 MobiDBLite consensus disorder prediction 1 96 - -
Dere09g1371 622 SUPERFAMILY RING/U-box 474 530 - -
Dere09g1371 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 397 IPR013083 -
Dere09g1371 622 SMART RWD2001b 125 260 IPR006575 GO:0005515
Dere09g1371 622 ProSiteProfiles RWD domain profile. 125 260 IPR006575 GO:0005515
Dere09g1371 622 SUPERFAMILY RING/U-box 383 446 - -
Dere09g1371 622 SMART ring_2 315 362 IPR001841 -
Dere09g1371 622 SMART ring_2 488 517 IPR001841 -
Dere09g1371 622 SMART ring_2 571 600 IPR001841 -
Dere09g1371 622 ProSiteProfiles TRIAD supradomain profile. 311 540 IPR044066 -
Dere09g1371 622 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 163 529 IPR031127 GO:0004842|GO:0016567
Dere09g1371 622 Pfam IBR domain, a half RING-finger domain 383 441 IPR002867 GO:0008270
Dere09g1371 622 Pfam IBR domain, a half RING-finger domain 478 522 IPR002867 GO:0008270
Dere09g1371 622 Gene3D Ubiquitin Conjugating Enzyme 111 261 IPR016135 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1371 327 543 ARIADNE family AT3G27710 25.000 7.36e-16 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1371 09 17782397 17787748 Dere09g1371 09 17782397 17787748 ECH