Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1368 ATGGACGGAGCGAGTAATAGCGGCGGAGACGGCGGGGATACCCAGATGGCGGCTCCGGCTCCGGCCCCCATTTCTAGTGCGAACGCTCCACCGCCGTTTCTTAGTAAGACGTATGACATGGTGGACGACCCGTCGTCTGATGCGATCGTGTCTTGGAGCCGAACCAACAATAGCTTCGTGGTTTGGAACCCACCCGAGTTTGCCAGAGACCTGTTGCCTAAGTACTTCAAGCACAATAACTTTTCCAGCTTTGTCAGGCAGTTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGGTGGGAATTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATAACTCGACGAAAACCTGCCCAAGGTCATAGTCATCAACAAGCACAGCATACACATGGGCAGAGTTCATCAGTTGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTTATGCAGGAGCTTGTGAGGCTGAGGCAGCAGCAACAGTCCACTGATAACCAGCTTCAGACAATGGTTCAGCGCCTTCAGGGAATGGAGCAAAGACAGCAGCAAATGATGTCATTCCTCGCCAAGGCTGTCCAGAGCCCGGGCTTCTTGGCTCAGTTTGTACATCAGCAAAATGAGAGCAATAGGCGCATATCTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGTATTTCTGAAACAGAACATGCTGCTGCTTCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAGCAGCAAAAGCAATGCTAAGGCAAATAATGAAATTGGATACTTCTCGGCCAGAATCCTTTAATAACAACCCTGATAGTTACTTGATTGGAGATGGTTCATCATCGACCGGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGACTTCTGGAGTAACATTTCAAGAGGTCCCACCAACATCAGTGCAGTCTTCTCACATGCCAGCTGTGACAGGGACTTCGGGGCCCTCAGCTGGCAAATCTGAAATTCCATCTACAAAAGTTGAAGCTTCTATGTCTGCTCCTCAGGTAGATGTCCTGATGCCTGAGCTTTCTCCAATACCAGAGACAGTGACAGAAAGTATTCTTGATGTTCCTGATGAAAAATTAGTGGGACCTGAGATGGACAACATGGATCCTACTTCATTGGGAGTGAATGGGTCTTTGCCCACTGATATTGGTAGTATCTCACCTGATACAGACATTGATGACTTGTTTCGCAATCCTTCCTTTTGGGATGATTTTCTTTTGCAAAGCCCATTGCCAGAAGATGTCGAGACAAATGCTGCTGAAGCTATGTCCAATGAGGTACAGCCAATGGAAAATGGATGGGACAAAGCTGAACACATGAGCCAACTAACGGAGCAGATGGGTCTTCTTTCATCTGATCCAAATGGAGTCTGA 1461 0.4723 MDGASNSGGDGGDTQMAAPAPAPISSANAPPPFLSKTYDMVDDPSSDAIVSWSRTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAQGHSHQQAQHTHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVHQQNESNRRISEANKKRRLKQEGISETEHAAASDGQIVKYQPLMNEAAKAMLRQIMKLDTSRPESFNNNPDSYLIGDGSSSTGAMDSSSSSSWTSGVTFQEVPPTSVQSSHMPAVTGTSGPSAGKSEIPSTKVEASMSAPQVDVLMPELSPIPETVTESILDVPDEKLVGPEMDNMDPTSLGVNGSLPTDIGSISPDTDIDDLFRNPSFWDDFLLQSPLPEDVETNAAEAMSNEVQPMENGWDKAEHMSQLTEQMGLLSSDPNGV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1368 486 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 MobiDBLite consensus disorder prediction 226 252 - -
Dere09g1368 486 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 MobiDBLite consensus disorder prediction 120 140 - -
Dere09g1368 486 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 MobiDBLite consensus disorder prediction 229 248 - -
Dere09g1368 486 Coils Coil 151 178 - -
Dere09g1368 486 FunFam Heat shock transcription factor 1 26 123 - -
Dere09g1368 486 Gene3D - 25 123 IPR036388 -
Dere09g1368 486 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Dere09g1368 486 MobiDBLite consensus disorder prediction 1 38 - -
Dere09g1368 486 MobiDBLite consensus disorder prediction 282 349 - -
Dere09g1368 486 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g1368 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 315 IPR027725 -
Dere09g1368 486 MobiDBLite consensus disorder prediction 125 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1368 Dere-ChrDere09 17742758 17746115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1368 4 480 HSF AT1G32330 57.084 2.28e-177 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere09g1368 HSF_DNA-bind 3.4e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1368 09 17742758 17746115 Dere09g1368 09 17742758 17746115 ECH