Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1358 ATGTATGGGGATTGCCAAGTGATGTCAAGTATGGGAGGGAACATGGTAGTGAACTCAGAAACACTCTTCTCTTCTTCCATTCAAAACTCCAGCTTCAACTTCATCCCCTCCATGCCTTTCCAACCTTTTGCACCTCCCATGAAAGGAGAAGATGGGATGATGATGCGAGGGAAGGAAGAGATCATGGAGAGTGCGTCAGGTAGCGAGCAAGCTGATCATGACAAGTCTGGGAATGAGCAAGAGAGTGAACAGCCTCCTAACAAGAAGAAACGTTACCACAGGCACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGACAAGCAAAGGATGAAACTGAGCCAAGAGCTGGGATTGAAGCCACGCCAAGTGAAGTTCTGGTTTCAAAATCGTCGAACCCAGATGAAGGCACAACAAGATCGAGCGGATAATGTGATATTGAGAGCAGAAAATGAGAACCTAAAGACTGAGAACTATCGTCTGCAAGCAGCACTGCGTAATGTGATGTGTCCCAATTGCGGCGGTCCGGCCATGATGGGTGCTGATATGGGCATGGATGACCACCAGCTTCGCCTTGAAAATGCTCGGCTCAGAGAAGAGTTAGAACGCGTTTGTTGTCTCACTTCAAGATACACGGGCCGCCCACTGCAAACAATGGCGTCACCTCCTCCTCTTTTGGCTCCTTCCTTGGATTTAGACATGAACATATACTCAAGGCACTTCGAGGATCCTGTTGCCTCTTGTACTACGGAGATGATTCCTGTCCCAATGTTGCCTCCTCCAGAAACTTCACCATTTCCAGAGGGTGGTCTGTTATTGATCGAAGAAGAGAAGTCCCTGGCGTTGGAGCTCGCAGTTTCATCCATGGATGAACTCGTGAAGATGTGTCAAGCAACTGAGCCGCTTTGGACAAGAAACAATGAGAATGAAAGGGAAGTATTCAATTTTGAGGAGCACGCAAGGCTGTTTCAGTGGCCTCTGAACCTCAAGAACCATTCGAGTGAGCTCAGGAGAGAAGCTAGTCGTGACACTGCTGTGGTTATAATGAATAGCGTCACTCTTGTTGACGCCTTCCTCGATGCTCACAAGTGGATGGAATTGTTCCCTACAATTGTTTCTAGGGCAAGAACTGTCCAAATTATATCATCTGGTTCTTCTGGTCATGCAAGCGGGTCTCTTCAATTGATGTACGCAGAATTACAAGTGATTTCTCCCTTGGTGTCCACTCGTGAGACTCATTTTCTTCGTTATTGCCAACAAAACGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTCTTGATAGCTTTCATGAAAATTTTCACCATTCTTATCCCAGATACTGCAGGCGACCCTCTGGCTGTGTTATTCAAGATATGCCAAATGGGTACTCAAGGGTCACGTGGGTTGAGCATGCAGAGGTAGAAGAGAAACCTGTGCATCAGATATTCAGTAACTATGTGTACAATGGAATGGCATTCGGAGCGCAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCGAGCCTCATGGCAAGGAACATTTCGGACCTTGGAGTGATACCCTCACCAGAAGCCAGAAAGAACTTAATGAAACTGGCTCAAAGAATGATTAGAACGTTTAGCCTTAACATGAGCACCTCCAGTGGTCAATCATGGACGGCCTTATCAGATTCCCCTGAAGACACTGTAAGAATCACAACCAGGAAAATCACAAACCCAGGTCAACCTTATGGGGTCATACTCAGCGCCGTCTCTACCACCTGGCTTCCCTATTCTCACTCCAAGGTCTTTGACCTCCTGAAGGACGAACGTCGCAGATCTCAGTTGGATTTTCTCTCCAATGGGAACTCTTTGCATGAAGTGGCTCATATTGCAAATGGCTCGCATCCAGGAAATTGCATCTCTCTTTTGCGCATAAATGTAGCGAGCAACTCGTCGCAGAACGTAGAGCTAGTGCTGCAAGAGAGCTGCACCGACCAGTCGGGGAGCCTCGTAGTGTACGCTACCATCGATGTGGACTCGATCCAGCTAGCCATGTCCGGCGAGGACCCATCCTGCATAGCCCTTCTTCCCCAGGGGTTCGTAATAGTTCCAGCAACAACAAGCGTAGACGCAGCCAGCTTAGCCATCGATGGCAATTCAGCTGAGGCTGGAACTACTGGAGCACCACCACCTCCGTCTTCTACTATAAACCCAGGTTGCCTTCTCACAGTGGGGCTGCAGGTTCTGGCTAGTACCATCCCTTCTGCGAAGCTCAATCTCTCCAGCGTCACCGCCGTCAATAACCATCTCTGCAATACTGTACACCAGATTGAAGCTACTCTTTGCACCGAGAATGGCAATTTTGTTGGGTCTTGCACTGAACCCACAACTAGTGCAACCCCTAAGCAATAG 2430 0.484 MYGDCQVMSSMGGNMVVNSETLFSSSIQNSSFNFIPSMPFQPFAPPMKGEDGMMMRGKEEIMESASGSEQADHDKSGNEQESEQPPNKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKTENYRLQAALRNVMCPNCGGPAMMGADMGMDDHQLRLENARLREELERVCCLTSRYTGRPLQTMASPPPLLAPSLDLDMNIYSRHFEDPVASCTTEMIPVPMLPPPETSPFPEGGLLLIEEEKSLALELAVSSMDELVKMCQATEPLWTRNNENEREVFNFEEHARLFQWPLNLKNHSSELRREASRDTAVVIMNSVTLVDAFLDAHKWMELFPTIVSRARTVQIISSGSSGHASGSLQLMYAELQVISPLVSTRETHFLRYCQQNAEEGTWAIVDFPLDSFHENFHHSYPRYCRRPSGCVIQDMPNGYSRVTWVEHAEVEEKPVHQIFSNYVYNGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSPEDTVRITTRKITNPGQPYGVILSAVSTTWLPYSHSKVFDLLKDERRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELVLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIALLPQGFVIVPATTSVDAASLAIDGNSAEAGTTGAPPPPSSTINPGCLLTVGLQVLASTIPSAKLNLSSVTAVNNHLCNTVHQIEATLCTENGNFVGSCTEPTTSATPKQ 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1358 809 Pfam Homeodomain 89 144 IPR001356 GO:0003677
Dere09g1358 809 Coils Coil 145 165 - -
Dere09g1358 809 Gene3D - 73 157 - -
Dere09g1358 809 SMART START_1 291 517 IPR002913 GO:0008289
Dere09g1358 809 CDD START_ArGLABRA2_like 286 516 - -
Dere09g1358 809 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Dere09g1358 809 Gene3D - 332 506 IPR023393 -
Dere09g1358 809 FunFam Homeobox-leucine zipper protein HDG1 76 162 - -
Dere09g1358 809 SMART HOX_1 87 150 IPR001356 GO:0003677
Dere09g1358 809 SUPERFAMILY Bet v1-like 283 519 - -
Dere09g1358 809 SUPERFAMILY Homeodomain-like 76 147 IPR009057 -
Dere09g1358 809 Pfam START domain 292 517 IPR002913 GO:0008289
Dere09g1358 809 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 787 IPR042160 -
Dere09g1358 809 MobiDBLite consensus disorder prediction 61 96 - -
Dere09g1358 809 ProSiteProfiles START domain profile. 282 520 IPR002913 GO:0008289
Dere09g1358 809 CDD homeodomain 89 147 IPR001356 GO:0003677
Dere09g1358 809 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Dere09g1358 809 MobiDBLite consensus disorder prediction 61 88 - -
Dere09g1358 809 SUPERFAMILY Bet v1-like 553 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1358 Dere-ChrDere09 17632678 17637695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1358 8 787 Homeobox Transcription Factor Family AT5G46880 57.619 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere09g1358 START 4.2e-40 CL0209